Locus 8638

Sequence ID 3L_DroMel_CAF1
Location 22,436,503 – 22,436,616
Length 113
Max. P 0.670892
window14155

overview

Window 5

Location 22,436,503 – 22,436,616
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.50
Mean single sequence MFE -36.12
Consensus MFE -26.10
Energy contribution -26.50
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.72
SVM decision value 0.29
SVM RNA-class probability 0.670892
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22436503 113 - 23771897
GCCUUAGUUUCUGUAGUGCUGUAGUUGCUGUUGUGGCAUGAAAUUUUAGACAUCCCAACAAUGGCAGCCAGAUGCA------GGCAUGGACAGCCGCA-UACAGAGGCUCAGCUAACUGC
((...(((((((((((((((((...(((((((((((.(((..........))).)).)))))))))(((.......------)))....)))).))).-))))))))))..))....... ( -38.50)
>DroSec_CAF1 8381 113 - 1
CCCUUAGUUGCUGUAGUGCUGUAGUUGCUGUUGUGGCAUGAAAUUUUAGACAUCCCAACAAUGGCAGCCAGAUGCA------GGCAUGGACAGCCGCA-UACAGAGGCUCAGCUAACUGC
....(((((((((.(((.((((((((((((((((((.(((..........))).)).)))))))))))....(((.------(((.......))))))-)))))..))))))).))))). ( -40.70)
>DroSim_CAF1 13399 113 - 1
GCCUUAGUUGCUGUAGUGCUGUAGUUGCUGUUGUGGCAUGAAAUUUUAGACAUCCCAACAAUGGCAGCCAGAUGCA------GGCAUGGACAGCCGCA-UACAGAGGCUCAGCUAACUGC
....(((((((((.(((.((((((((((((((((((.(((..........))).)).)))))))))))....(((.------(((.......))))))-)))))..))))))).))))). ( -40.70)
>DroEre_CAF1 14308 102 - 1
-----------------GCUGUAGUUGCUGUUGUGGCAUGAAAUUUUAGACAUCCAAACAAUGGCAGCCAGAUGCAGGCGCAGGCAUGGACAGCCGCA-CACAGAGGCUCAGCUAACUGC
-----------------((((.(((..((((((((((.(((....)))....((((..(....((.(((.......)))))..)..))))..))))))-.))))..)))))))....... ( -33.10)
>DroYak_CAF1 53067 97 - 1
-----------------GCUGUAGUUGCUGUUGUGGCAUGAAAUUUUAGACAUCCAAACAAUGGCAGCCAGAUGCA------GGCAUGGACAGCAGCAUCACACAGGCUCAGCUAACUGC
-----------------((((..(((((((((((((.(((..........)))))..)))))))))))..(((((.------.((.......)).))))).........))))....... ( -27.60)
>consensus
_CCUUAGUU_CUGUAGUGCUGUAGUUGCUGUUGUGGCAUGAAAUUUUAGACAUCCCAACAAUGGCAGCCAGAUGCA______GGCAUGGACAGCCGCA_UACAGAGGCUCAGCUAACUGC
.................((((.(((..((((((((((.............(((.......)))...((((..(((........)))))).).))))))..))))..)))))))....... (-26.10 = -26.50 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:03 2006