Locus 8636

Sequence ID	3L_DroMel_CAF1
Location	22,434,912 – 22,435,002
Length	90
Max. P	0.640245

overview

Window 3

Location	22,434,912 – 22,435,002
Length	90
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	78.08
Mean single sequence MFE	-20.25
Consensus MFE	-11.34
Energy contribution	-14.18
Covariance contribution	2.84
Combinations/Pair	1.25
Mean z-score	-1.82
Structure conservation index	0.56
SVM decision value	0.22
SVM RNA-class probability	0.640245
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22434912 90 + 23771897
CUAUUCACUUUAUUUUCUUGGCAUACUUUUGCAAACGUUUAU-UAUCACAUUUUUUUUUGGGGCGCGAAUUUGUGUACAGGUAGA-GUGAAA
...((((((((((((.....(((((..(((((....(.....-...).((........))....)))))..)))))..)))))))-))))). ( -19.30)
>DroSec_CAF1 6756 89 + 1
CUAUUCACAUUAUUUUCUUGGCACACUUUUGCAAACGUUUAC-UACCACAUUUUA-UAGGCGGCGCGAAUUUGUGUACAGGUAGA-GUGAAA
.........((((((((((((((((..(((((...((((((.-............-))))))..)))))..))))).)))).)))-)))).. ( -21.82)
>DroSim_CAF1 11774 89 + 1
CUAUUCACAUUAUUUUCUUGGCACACUUUUGCAAACGUUUAC-UACCACAUUUUA-UAGGCGGCGCGAAUUUGUGUACAGGUAGA-GUGAAA
.........((((((((((((((((..(((((...((((((.-............-))))))..)))))..))))).)))).)))-)))).. ( -21.82)
>DroEre_CAF1 12721 91 + 1
CCAUUCACUUUAUUUUUCCGGCACACUUUUGCAACCGUUUUUAUACUACACUUUU-UAAUCGGCGCGAAUUUGUGUACAGGUGAAUGUGAAA
.(((((((((..........(((((..(((((..(((...(((............-))).))).)))))..)))))..)))))))))..... ( -20.90)
>DroYak_CAF1 49110 76 + 1
CCAU---------------GGCACAUUUUUGCAACCGUUCUUAGUCCACACUUUU-UAACCGACGCAAAUUUGUGUACAGGUGGAAGAGAAA
((((---------------.(((((..(((((..(.(((...(((....)))...-.))).)..)))))..)))))....))))........ ( -17.40)
>consensus
CUAUUCACAUUAUUUUCUUGGCACACUUUUGCAAACGUUUAU_UACCACAUUUUU_UAAGCGGCGCGAAUUUGUGUACAGGUAGA_GUGAAA
...(((((....(((.(((((((((..(((((...((((((...............))))))..)))))..))))).)))).))).))))). (-11.34 = -14.18 +   2.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:21:01 2006