Locus 8633

Sequence ID 3L_DroMel_CAF1
Location 22,433,895 – 22,433,989
Length 94
Max. P 0.997256
window14146

overview

Window 6

Location 22,433,895 – 22,433,989
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 76.34
Mean single sequence MFE -26.17
Consensus MFE -13.87
Energy contribution -13.21
Covariance contribution -0.66
Combinations/Pair 1.17
Mean z-score -3.71
Structure conservation index 0.53
SVM decision value 2.83
SVM RNA-class probability 0.997256
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22433895 94 + 23771897
AAUAAUUAUAUACCAUUCAGAUCAAAUCUAGAUCCGGAUCCGGAUCCGGAUCCUUAUCCUGAUCGGAUUUGAUCUCCAACGCCAUUGCUGUGGA
............((((..(((((((((((.((((.((((..((((....))))..)))).))))))))))))))).....((....)).)))). ( -31.60)
>DroSec_CAF1 5770 74 + 1
AAUAAUUCCAUACAAUUCAG--CA------GAUCCAGAUCCGG------------AUCCUGAUCGGAUUUGAUCUCCGGUGCCAUUGCCGUGGA
......(((((........(--.(------((((.((((((((------------.......))))))))))))).)(((......)))))))) ( -21.50)
>DroSim_CAF1 10759 74 + 1
AAUAAUUCCAUACAAUUCAG--CA------GAUCCAGAUCCGG------------UUCCUGAUCGGAUUUGAUCUCUGACGCCAUCGCCGUGGA
......(((((.....((((--.(------((((.((((((((------------((...))))))))))))))))))).((....)).))))) ( -25.40)
>consensus
AAUAAUUCCAUACAAUUCAG__CA______GAUCCAGAUCCGG____________AUCCUGAUCGGAUUUGAUCUCCGACGCCAUUGCCGUGGA
..............................((((.((((((((...................))))))))))))((((..((....))..)))) (-13.87 = -13.21 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:54 2006