Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,431,323 – 22,431,477 |
Length | 154 |
Max. P | 0.725889 |
Location | 22,431,323 – 22,431,437 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 95.30 |
Mean single sequence MFE | -38.36 |
Consensus MFE | -36.46 |
Energy contribution | -36.10 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.11 |
Mean z-score | -1.15 |
Structure conservation index | 0.95 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.725889 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22431323 114 - 23771897 AUGUAAGCACUUCUCCGCGGUGCGAUGCCUGCUUUCUCCGCUUUCUCUGCUUUCUCCGCAAGAUAAGCAACACAAUGCGCCAUUUGCAGGAUUUGCGCCUGCAAUGGGCGG-GCA ......(((((.......)))))..(((((((......(((......(((((....(....)..))))).......)))(((((.(((((.......))))))))))))))-))) ( -39.82) >DroSec_CAF1 3040 115 - 1 AUGUAAGCACUUCUCCGCGGUGCGAUGCCUGCUUUCUCCGCUUUCUCUGCUUUCUCCGCAAGAUAAGCAACACAAUGCGCCAUUUGCAGGAUUUGCGCCUGAGAUGGGCGGGGUA ............(((((((((((((..(((((......(((......(((((....(....)..))))).......)))......)))))..)))))))........)))))).. ( -37.02) >DroSim_CAF1 8171 115 - 1 AUGUAAGCACUUCUCCGCGGUGCGAUGCCUGCUUUCUCCGCUUUCUCUGCUUUCUCCGCAAGAUAAGCAACACAAUGCGCCAUUUGCAGGAUUUGCGCCUGAGAUGGGCGGGGUA ............(((((((((((((..(((((......(((......(((((....(....)..))))).......)))......)))))..)))))))........)))))).. ( -37.02) >DroEre_CAF1 9256 114 - 1 AUGUAAGCACUUCUCCGCGGUGCGGUGCCUGCUUUCUCCGCUUUCGCUGCUUUCUCCGCAAGAUAAGCAACACAAUGCGCCAUUUGCAGGAUUUGCGCCUGCGAUGGGCGGAGC- ............(((((((((((.(((..((((((((..((....))(((.......)))))).))))).)))...)))))..(((((((.......)))))))...)))))).- ( -40.80) >DroYak_CAF1 44928 115 - 1 AUGUAAGCACUUCUCCGCGGUGCGGUCCCUGCUUUCUACGUUUUCUCUGCUUUCUCCGCAAGAUAAGCACCACAAUGCGCCAUUUGCAGGAUUUGCGCCUGCGAUGGGCGGAGUA ............(((((((((((((..(((((......(((......(((((....(....)..))))).......)))......)))))..)))))))..(....))))))).. ( -37.12) >consensus AUGUAAGCACUUCUCCGCGGUGCGAUGCCUGCUUUCUCCGCUUUCUCUGCUUUCUCCGCAAGAUAAGCAACACAAUGCGCCAUUUGCAGGAUUUGCGCCUGCGAUGGGCGGAGUA ............(((((((((((((..(((((......(((......(((((....(....)..))))).......)))......)))))..)))))))........)))))).. (-36.46 = -36.10 + -0.36)
Location | 22,431,358 – 22,431,477 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 97.48 |
Mean single sequence MFE | -32.18 |
Consensus MFE | -28.68 |
Energy contribution | -28.88 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.27 |
Structure conservation index | 0.89 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529181 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22431358 119 + 23771897 CGCAUUGUGUUGCUUAUCUUGCGGAGAAAGCAGAGAAAGCGGAGAAAGCAGGCAUCGCACCGCGGAGAAGUGCUUACAUUUGCGCAAAUGCAGCACAACAAACACAAGCAAACAAGGAC .((.(((((((((((.((((((.......))).))))))).......((..(((((((...))))....((((........))))...))).))......))))))))).......... ( -31.40) >DroSec_CAF1 3076 119 + 1 CGCAUUGUGUUGCUUAUCUUGCGGAGAAAGCAGAGAAAGCGGAGAAAGCAGGCAUCGCACCGCGGAGAAGUGCUUACAUUUGCGCAAAUGCAGCACAACAAACACAAGUAAACAAGGAC ....(((((((((...((((((.......))).)))..(((.((((((((..(..(((...)))..)...)))))...))).)))....)))))))))..................... ( -30.40) >DroSim_CAF1 8207 119 + 1 CGCAUUGUGUUGCUUAUCUUGCGGAGAAAGCAGAGAAAGCGGAGAAAGCAGGCAUCGCACCGCGGAGAAGUGCUUACAUUUGCGCAAAUGCAGCACAACAAACACAAGCAAACAAGGAC .((.(((((((((((.((((((.......))).))))))).......((..(((((((...))))....((((........))))...))).))......))))))))).......... ( -31.40) >DroEre_CAF1 9291 119 + 1 CGCAUUGUGUUGCUUAUCUUGCGGAGAAAGCAGCGAAAGCGGAGAAAGCAGGCACCGCACCGCGGAGAAGUGCUUACAUUUGCGCAAAUGCAGCACAACAAACACAAGCAAACAAGGAC .((.(((((((((((.((((((.......)).((....)).)))))))).....((((...))))....(((((..(((((....))))).)))))....))))))))).......... ( -36.90) >DroYak_CAF1 44964 119 + 1 CGCAUUGUGGUGCUUAUCUUGCGGAGAAAGCAGAGAAAACGUAGAAAGCAGGGACCGCACCGCGGAGAAGUGCUUACAUUUGCGCAAAUGCAGCACAACAAACACAAGCAAACAAGGAC .((.(((((((((...((((((.........................))))))...)))))))))....(((((..(((((....))))).)))))...........)).......... ( -30.81) >consensus CGCAUUGUGUUGCUUAUCUUGCGGAGAAAGCAGAGAAAGCGGAGAAAGCAGGCAUCGCACCGCGGAGAAGUGCUUACAUUUGCGCAAAUGCAGCACAACAAACACAAGCAAACAAGGAC .((.(((((((((((.((((((.......)))).)))))).......((..(((((((...))))....((((........))))...))).))......))))))))).......... (-28.68 = -28.88 + 0.20)
Location | 22,431,358 – 22,431,477 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 97.48 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -29.98 |
Energy contribution | -30.22 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.42 |
Structure conservation index | 0.88 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692075 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22431358 119 - 23771897 GUCCUUGUUUGCUUGUGUUUGUUGUGCUGCAUUUGCGCAAAUGUAAGCACUUCUCCGCGGUGCGAUGCCUGCUUUCUCCGCUUUCUCUGCUUUCUCCGCAAGAUAAGCAACACAAUGCG ..........(((((((((....(((((((((((....)))))).)))))......((((.((...)))))).......(((((((.(((.......)))))).))))))))))).)). ( -33.70) >DroSec_CAF1 3076 119 - 1 GUCCUUGUUUACUUGUGUUUGUUGUGCUGCAUUUGCGCAAAUGUAAGCACUUCUCCGCGGUGCGAUGCCUGCUUUCUCCGCUUUCUCUGCUUUCUCCGCAAGAUAAGCAACACAAUGCG ....(((((((((((((......(((((((((((....)))))).)))))......((((.(((.....))).....))))...............)))))).)))))))......... ( -31.10) >DroSim_CAF1 8207 119 - 1 GUCCUUGUUUGCUUGUGUUUGUUGUGCUGCAUUUGCGCAAAUGUAAGCACUUCUCCGCGGUGCGAUGCCUGCUUUCUCCGCUUUCUCUGCUUUCUCCGCAAGAUAAGCAACACAAUGCG ..........(((((((((....(((((((((((....)))))).)))))......((((.((...)))))).......(((((((.(((.......)))))).))))))))))).)). ( -33.70) >DroEre_CAF1 9291 119 - 1 GUCCUUGUUUGCUUGUGUUUGUUGUGCUGCAUUUGCGCAAAUGUAAGCACUUCUCCGCGGUGCGGUGCCUGCUUUCUCCGCUUUCGCUGCUUUCUCCGCAAGAUAAGCAACACAAUGCG ..........(((((((((.((((((((((((((....)))))).))))).(((..((((.((((((...((.......))...)))))).....)))).)))..)))))))))).)). ( -39.60) >DroYak_CAF1 44964 119 - 1 GUCCUUGUUUGCUUGUGUUUGUUGUGCUGCAUUUGCGCAAAUGUAAGCACUUCUCCGCGGUGCGGUCCCUGCUUUCUACGUUUUCUCUGCUUUCUCCGCAAGAUAAGCACCACAAUGCG ......(((((...((((((((((((((((((((....)))))).)))))......((((.((((.....((.......)).....)))).....))))..)))))))))..))).)). ( -32.50) >consensus GUCCUUGUUUGCUUGUGUUUGUUGUGCUGCAUUUGCGCAAAUGUAAGCACUUCUCCGCGGUGCGAUGCCUGCUUUCUCCGCUUUCUCUGCUUUCUCCGCAAGAUAAGCAACACAAUGCG ((..((((((((((((.((....(((((((((((....)))))).)))))......((((.(((......((.......))......))).....)))))).)))))))).)))).)). (-29.98 = -30.22 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:46 2006