Locus 8627

Sequence ID 3L_DroMel_CAF1
Location 22,430,868 – 22,430,970
Length 102
Max. P 0.500000
window14134

overview

Window 4

Location 22,430,868 – 22,430,970
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 88.04
Mean single sequence MFE -18.98
Consensus MFE -13.37
Energy contribution -13.25
Covariance contribution -0.12
Combinations/Pair 1.17
Mean z-score -1.67
Structure conservation index 0.70
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22430868 102 - 23771897
ACAAUUUUUAUAACCAGAGCAUGCCGAAGUUUUACAGCCGACAAAAUCCAAAACUCGGCACAAAAAUGAAAACGAAACAGAAAAUUUUGGCCGGAAAAAGGC
.............((....(..(((((((((((...(((((.............))))).((....))............)))))))))))..).....)). ( -17.32)
>DroSec_CAF1 2568 102 - 1
ACAAUUUUUAUAACCAGAGCAGGCCGAAGUUUUACAGCCGACAAAAUCCAAAACUCGGCACAAAAAUGAAAACGAAACGGAAAAAUUGGGCCGGAAAAAGGC
.((((((((....((......))(((..(((((...(((((.............))))).((....)))))))....))))))))))).(((.......))) ( -20.02)
>DroSim_CAF1 7699 102 - 1
ACAAUUUUUAUAACCAGAGCAGGCCGAAGUUUUACAGCCGACAAAAUCCAAAACUCGGCACAAAAAUGAAAACGAAACGGAAAAAUUGGGCCGGAAAAAGGC
.((((((((....((......))(((..(((((...(((((.............))))).((....)))))))....))))))))))).(((.......))) ( -20.02)
>DroEre_CAF1 8835 100 - 1
ACAAUUUUUACAACCAGAGCGGGUCAAAGUUUUACAGCCGACCAAAUCCAAAACUCGGCACA-AAAUGAAAACGAAAUAGAAAAAUUGGGCCAGAA-AAGGC
.((((((((...(((......)))....(((((.(((((((.............)))))...-...))))))).......)))))))).(((....-..))) ( -17.22)
>DroYak_CAF1 44509 92 - 1
ACAAUUUUUAUAACCAGAGCGGGCCAAAGUUUUACAGC----------CAAAAUUUGGCACAGAAAUGAAAACGAAGUAGAGAAAUUGCGCCGGAAAAAGGC
.............((....(.((((((..((((((.((----------((.....)))).((....))........))))))...))).))).).....)). ( -20.30)
>consensus
ACAAUUUUUAUAACCAGAGCAGGCCGAAGUUUUACAGCCGACAAAAUCCAAAACUCGGCACAAAAAUGAAAACGAAACAGAAAAAUUGGGCCGGAAAAAGGC
.((((((((.............(((((.(((((................)))))))))).((....))............)))))))).(((.......))) (-13.37 = -13.25 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:42 2006