| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,429,585 – 22,429,699 |
| Length | 114 |
| Max. P | 0.995624 |
| Location | 22,429,585 – 22,429,699 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.81 |
| Mean single sequence MFE | -30.78 |
| Consensus MFE | -7.12 |
| Energy contribution | -10.34 |
| Covariance contribution | 3.22 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.23 |
| SVM decision value | 2.60 |
| SVM RNA-class probability | 0.995624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22429585 114 - 23771897 CCACUGUGGCACUCAACUAGUUUCCGUUAUAAUUGCAGCAGACACAUAAAUAGUAAACUGCAA-UAAAACGAGAG-CGGAGCGGGGAG----CCAUAAAAGAAGGGGUGGGGCUAUCAAA ((((((((((.(((..((.(((..((((...(((((((...((.........))...))))))-)..))))..))-)..))..))).)----)))).........))))).......... ( -33.50) >DroSec_CAF1 1295 118 - 1 CCACUGUGGCACUCAACUAGUUUCCGUUAUAAUUGCAGCAGACACAUAAAUAGUAAACUGCAA-UAAAACGAGAG-CGGAGCGGGGAGCCAGCCAUAAAAGAAGGGGUGGGGCUAUCAAA (((((.((((.(((..((.(((..((((...(((((((...((.........))...))))))-)..))))..))-)..))..))).)))).((.........))))))).......... ( -34.30) >DroSim_CAF1 6189 117 - 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAUCAUAA--UGGAAUUAUAUCGAGAGGCGAGGCGGGGAGCCCGCCAUAAAAGAAGGGGUG-GGCUAUCAAA ........................................................--..........(((.....)))....(..((((((((...........))))-))))..)... ( -16.80) >DroEre_CAF1 7307 112 - 1 CCACUGUGGCACUCAACUAGUUUCCGUUAUAAUUGCAGCAGACACAUAAAUAGUAAGCUGCAA-UGAAAUGGGAG-CGGAGCGG-GAG----CCAUAAAAGAAG-GGUGGGUCUAUCAAA ((((((((((.(((..((.(((((((((...((((((((..((.........))..)))))))-)..))))))))-)..)).))-).)----))))........-))))).......... ( -39.00) >DroYak_CAF1 41371 114 - 1 CCACUGUGGCACUCAACUAGUUUACGUUAUAAUUGCAGCAGACACAUAAAUAGUAAACUGCAA-UAAAAUGGGAG-UGCAGCGGGGAG----CCAUAAAGGAAGGGGUGGGUCUAUCAAA ...((((.(((((((((........)))...(((((((...((.........))...))))))-).......)))-))).))))(((.----((((..........)))).)))...... ( -30.30) >consensus CCACUGUGGCACUCAACUAGUUUCCGUUAUAAUUGCAGCAGACACAUAAAUAGUAAACUGCAA_UAAAACGAGAG_CGGAGCGGGGAG____CCAUAAAAGAAGGGGUGGGGCUAUCAAA (((((...................((((.((.((((((...((.........))...)))))).)).))))...........((........))...........))))).......... ( -7.12 = -10.34 + 3.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:38 2006