Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,429,273 – 22,429,393 |
Length | 120 |
Max. P | 0.806425 |
Location | 22,429,273 – 22,429,393 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.25 |
Mean single sequence MFE | -39.84 |
Consensus MFE | -35.38 |
Energy contribution | -36.66 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.05 |
Mean z-score | -1.36 |
Structure conservation index | 0.89 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.806425 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22429273 120 - 23771897 AUUACAACAGUCCGACAUGCAAACACUGCAGCAUGGGUGGGGGCGGGCUGACUGCUGGGUGGCAGACACUUUGCACAUUACAAUGCAAUUAUUUCGGGCUGCUUGAACUGGAAGCAACCA ....(((((((((((..((((.....))))((((..((((..(((((.((.(((((....))))).)).)))))...)))).)))).......)))))))).)))....((......)). ( -39.10) >DroSec_CAF1 996 120 - 1 AUUACAACAGCCCGACAUGCAAACACUGCAGCAUGGGUGGAGGCGGGCUGACUGCUGGGUGGCAGACACUUUGCACAUUACAAUGCAAUUAUUUCGGGCUGCUUGAACUGGAAGCAACCA ....(((((((((((..((((.....))))((((.((((...(((((.((.(((((....))))).)).))))).))))...)))).......)))))))).)))....((......)). ( -41.70) >DroSim_CAF1 5894 119 - 1 AUUACAACAGCCCGACAUGCAAACACUGCAGCAUGGGUGG-GGCGGGCUGACUGCUGGGUGGCAGACACUUUGCACAUUACAAUGCAAUUAUUUCGGGCUGCUUGAACUGGAAGCAACCA ....(((((((((((..((((.....))))((((.((((.-.(((((.((.(((((....))))).)).))))).))))...)))).......)))))))).)))....((......)). ( -41.80) >DroEre_CAF1 7006 118 - 1 AUUACAACAGCCCGACAUGCAAACACUGCAGGG--GGGUGGGGCGGGCGUUCUGCUGGGUGGCAGACACUUUGCACAUUACAAUGCAAUUAUUUCGGGCUGCUUGAACUGGAAGCAACCA ....(((((((((((.(((.......((((..(--..(((..(((((.((((((((....)))))).))))))).)))..)..))))..))).)))))))).)))....((......)). ( -39.20) >DroYak_CAF1 41079 120 - 1 AUUACAACAGCCCGACAUGCAAACACUGCAGGAUGGGUGGGGGCCGGCUGACUGCUGCGUGGCAGACACUUUGCACAUUACAAUGCAAUUAUUUCGGGCUGCUUGAACUGGAAGCAACCA ....(((((((((((..((((..(((.((((.((.(((.(....).))).).).)))))))(((((...))))).........))))......)))))))).)))....((......)). ( -37.40) >consensus AUUACAACAGCCCGACAUGCAAACACUGCAGCAUGGGUGGGGGCGGGCUGACUGCUGGGUGGCAGACACUUUGCACAUUACAAUGCAAUUAUUUCGGGCUGCUUGAACUGGAAGCAACCA ....(((((((((((..((((.....))))((((.((((...(((((.((.(((((....))))).)).))))).))))...)))).......)))))))).)))....((......)). (-35.38 = -36.66 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:37 2006