Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,428,884 – 22,428,989 |
Length | 105 |
Max. P | 0.727437 |
Location | 22,428,884 – 22,428,989 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 85.80 |
Mean single sequence MFE | -18.48 |
Consensus MFE | -15.07 |
Energy contribution | -15.33 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.82 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.727437 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22428884 105 + 23771897 CUCUCUAAUCCGUUAAUAGAAACAUUAACGAGGCAUUUUCCGAAAAUUAUUUCGAGCACGCGAUACGACCAGCCUUUCCAUCGCAACACCAUCCCAUCCC-----AUCCC ..........(((((((......))))))).((.......(((((....))))).....(((((..((........)).)))))....))..........-----..... ( -14.60) >DroSec_CAF1 590 110 + 1 CUCUCUAAUCCGUUAAUAGAAACAUUAACGAGGCAUUUUCCGAAAAUUAUUUCGGGCACGCGAUACGACCAGCCUUUCCAUCGCAACACCAUCCCAUCCCAGUACAUCCC ..........(((((((......))))))).((.....(((((((....)))))))...(((((..((........)).)))))....)).................... ( -18.20) >DroSim_CAF1 5488 110 + 1 CUCUCUAAUCCGUUAAUAGAAACAUUAACGAGGCAUUUUCCGAAAAUUAUUUCGGGCACGCGAUACGACCAGCCUUUCCAUCGCAACACCAUCCCAUCCCAGUCCAUCCC ..........(((((((......))))))).(((....(((((((....)))))))...(((((..((........)).))))).................)))...... ( -19.00) >DroEre_CAF1 6647 94 + 1 CGCUCUAAUCCGUUAAUAGAAACAUUAACGAGGCAUUUUCCGAAAAUUAUUUCGGGCACGCGAUGCGACCAGCCCAACCCUUGCCCGCUCAUCC---------------- .((.......(((((((......))))))).((((......((((....))))((((.(((...)))....))))......)))).))......---------------- ( -22.10) >consensus CUCUCUAAUCCGUUAAUAGAAACAUUAACGAGGCAUUUUCCGAAAAUUAUUUCGGGCACGCGAUACGACCAGCCUUUCCAUCGCAACACCAUCCCAUCCC_____AUCCC ..........(((((((......))))))).(((....(((((((....)))))))..((.....))....))).................................... (-15.07 = -15.33 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:36 2006