Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,604,741 – 2,604,850 |
Length | 109 |
Max. P | 0.919641 |
Location | 2,604,741 – 2,604,850 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 88.19 |
Mean single sequence MFE | -17.80 |
Consensus MFE | -13.60 |
Energy contribution | -13.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.19 |
Structure conservation index | 0.76 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919641 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2604741 109 - 23771897 AAUUUCACACGUUGCUGGGGCAAAAAAAAAUAAUACCAAAAUGGUGCACAGAGAAUAAGAA----------AAAAAGUGCAUAACCAGCGGCAGCGAAAGUUUAAAUAAAAUUUAUUUC ..........((((((((................(((.....)))((((............----------.....))))....))))))))(((....)))................. ( -23.03) >DroSec_CAF1 3092 106 - 1 AAUUUCACACGUUGCAGGCG-AAAAAAAAAUAAUACCAAAAUGGUGCACAGAAAAUAAGAA------------AAAGUGCAUAACCAGCGGCAGCGAAAGUUUAAAUAAAAUUUAUUUC .........((((((..((.-.............(((.....)))((((............------------...)))).......)).)))))).((((((.....))))))..... ( -18.66) >DroSim_CAF1 5567 106 - 1 AAUUUCACACGUUGCAGGCG-AAAAAAAAAUAAUACCAAAAUGGUGCACAGAAAAUAAGAA------------AAAGUGCAUAACCAGCGGCAGCGAAAGUUUAAAUAAAAUUUAUUUC .........((((((..((.-.............(((.....)))((((............------------...)))).......)).)))))).((((((.....))))))..... ( -18.66) >DroEre_CAF1 3162 103 - 1 AAUUUCACACGUUGCAAGG---AAA-AAAAUAAUACCAAAAUGGUGCAGAAAAAAUA------------AAAAAAAGUGCAUAUCCAGCGGCAGCGAAAGUUUAAAUAAAAUUUAUUUC .........((((((..((---(..-........(((.....)))(((.........------------........)))...)))....)))))).((((((.....))))))..... ( -14.93) >DroYak_CAF1 6144 116 - 1 AAUUUCACACGUUGCAAGG---AAAAAAAAUAAUACCAAAAUGGUGCAGAAAAAAUACGAAAAAAAAAAAAAGAAAGUGCAUAACCAGCGGCAGCGAAAGUUUAAAUAAAAUUUAUUUC .........((((((....---...........((((.....))))...............................(((.......))))))))).((((((.....))))))..... ( -13.70) >consensus AAUUUCACACGUUGCAGGGG_AAAAAAAAAUAAUACCAAAAUGGUGCACAGAAAAUAAGAA__________A_AAAGUGCAUAACCAGCGGCAGCGAAAGUUUAAAUAAAAUUUAUUUC .........((((((..................((((.....))))...............................(((.......))))))))).((((((.....))))))..... (-13.60 = -13.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:01 2006