Locus 8618

Sequence ID 3L_DroMel_CAF1
Location 22,425,591 – 22,425,716
Length 125
Max. P 0.916317
window14116 window14117

overview

Window 6

Location 22,425,591 – 22,425,682
Length 91
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 92.93
Mean single sequence MFE -25.53
Consensus MFE -24.32
Energy contribution -24.43
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -2.07
Structure conservation index 0.95
SVM decision value 1.11
SVM RNA-class probability 0.916317
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22425591 91 + 23771897
CUAGCUACUCUUUUGCCGAGCAAAAAUGCUAAUUAAAGUCAGAACGCAAUGUUGCGGAAAAAUGUUUUCGUCCCAGAAGAGUGGAGGGU-----AA
((..(((((((((((....((((...(((................)))...))))(((..((....))..))))))))))))))..)).-----.. ( -23.89)
>DroSec_CAF1 2767 91 + 1
CUAGCUACUCUUUUGCCGAGCAAAAAUGCUAAUUAAAGUCAGAACGCAGUGGUGCGGAAAAAUGUUUUCGUCCCAGAAGAGUGGAGAGU-----AA
((..((((((((((((..((((....)))).......((....))))).(((..((((((....))))))..))))))))))))..)).-----.. ( -26.00)
>DroSim_CAF1 2099 96 + 1
CUAGCUACUCUUUUGCCGAGCAAAAAUGCUAAUUAAAGUCAGAACGCAAUGGUGCGGAAAAAUGUUUUCGUCCCAGAAGAGUGGAGAGAGUGGAGA
....((((((((((....((((....))))..............(((..(((..((((((....))))))..))).....)))))))))))))... ( -26.70)
>consensus
CUAGCUACUCUUUUGCCGAGCAAAAAUGCUAAUUAAAGUCAGAACGCAAUGGUGCGGAAAAAUGUUUUCGUCCCAGAAGAGUGGAGAGU_____AA
((..((((((((((((..((((....)))).......((....))))).(((.(((((((....))))))).))))))))))))..))........ (-24.32 = -24.43 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 22,425,607 – 22,425,716
Length 109
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 88.17
Mean single sequence MFE -16.97
Consensus MFE -16.00
Energy contribution -16.33
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.14
Structure conservation index 0.94
SVM decision value 0.08
SVM RNA-class probability 0.572639
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22425607 109 - 23771897
ACCAAGUCGACCUUUAAGUUUCCAGCCUU------CACCCUU-----ACCCUCCACUCUUCUGGGACGAAAACAUUUUUCCGCAACAUUGCGUUCUGACUUUAAUUAGCAUUUUUGCUCG
...((((((........(((.((((....------.......-----.............))))))).............((((....))))...)))))).....((((....)))).. ( -14.76)
>DroSec_CAF1 2783 115 - 1
ACCAAGUCGUCCUUUAAGUUCCCAUUCUUGUACUUUACCCUU-----ACUCUCCACUCUUCUGGGACGAAAACAUUUUUCCGCACCACUGCGUUCUGACUUUAAUUAGCAUUUUUGCUCG
...((((((((((..(((...........(((.........)-----))........)))..))))).............((((....))))....))))).....((((....)))).. ( -18.31)
>DroSim_CAF1 2115 120 - 1
ACCAAGUCGUCCUUUAAGUUCCCAUUCUUGUACUUUACCCUCUCCACUCUCUCCACUCUUCUGGGACGAAAACAUUUUUCCGCACCAUUGCGUUCUGACUUUAAUUAGCAUUUUUGCUCG
...((((((((((..(((.......................................)))..))))).............((((....))))....))))).....((((....)))).. ( -17.83)
>consensus
ACCAAGUCGUCCUUUAAGUUCCCAUUCUUGUACUUUACCCUU_____ACUCUCCACUCUUCUGGGACGAAAACAUUUUUCCGCACCAUUGCGUUCUGACUUUAAUUAGCAUUUUUGCUCG
...((((((((((..(((.......................................)))..))))).............((((....))))....))))).....((((....)))).. (-16.00 = -16.33 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:26 2006