| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,424,331 – 22,424,430 |
| Length | 99 |
| Max. P | 0.885777 |
| Location | 22,424,331 – 22,424,430 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.21 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -18.41 |
| Energy contribution | -18.48 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.885777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22424331 99 + 23771897 UUCCACUUUUAAUUGGAAACGGAGACAACUUGCAUCUAAAAGGGGUGUCAGCUUGUUAGCU------UCCGGAUAAUCGUAAGUGG-UUAAUC---CAAGGGUAUGAAA----------- (((((........))))).(((((((((((.((((((.....)))))).)).)))))....------)))).....(((((..(((-.....)---))....)))))..----------- ( -25.00) >DroSec_CAF1 1506 99 + 1 UUCCACUUUUAAUUGGAAACGGAGACAACUCGCAUCCAAAAGGGUUGUCAGCUUGUUAGCU------UCUGGAUAAUCAUAAGUGG-UUAAUC---UAAGGGUAACAAA----------- (((((........))))).....((((((((..........))))))))...((((((.((------(.((((((((((....)))-)).)))---))))).)))))).----------- ( -28.20) >DroSim_CAF1 783 105 + 1 UUCCACUUUUAAUUGGAAACGGAGACAACUCGCAUCCAAAAGGGUUGUCAGCUUGUUAGCUUGUUGUUCUGGAUAAUCAUAAGUGG-UUAAUC---CAAGGGUAACAAA----------- (((((........))))).....((((((((..........)))))))).(((....)))((((((..(((((((((((....)))-)).)))---).))..)))))).----------- ( -32.90) >DroYak_CAF1 4938 114 + 1 CUCGAGUUUUAAUUGGACAUGGAUAUAACUCGCGUCCAAUAGGGGUGUCAGCUUGUUAGCA------UUCAGAUAAUCUUAAGUGGAUUAAUCUUACAAGGGUAACAAGUUUGUAUGAUA ...........(((((((.(((.......))).)))))))....(((..(((((((((.(.------...(((((((((.....))))).))))......).)))))))))..))).... ( -25.90) >consensus UUCCACUUUUAAUUGGAAACGGAGACAACUCGCAUCCAAAAGGGGUGUCAGCUUGUUAGCU______UCCGGAUAAUCAUAAGUGG_UUAAUC___CAAGGGUAACAAA___________ ..((((((...((((....((((((((((((..........)))))))).(((....))).......))))..))))...)))))).................................. (-18.41 = -18.48 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:25 2006