Locus 8616

Sequence ID 3L_DroMel_CAF1
Location 22,424,131 – 22,424,251
Length 120
Max. P 0.998920
window14114

overview

Window 4

Location 22,424,131 – 22,424,251
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 86.25
Mean single sequence MFE -37.42
Consensus MFE -36.05
Energy contribution -35.92
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -3.19
Structure conservation index 0.96
SVM decision value 3.28
SVM RNA-class probability 0.998920
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22424131 120 + 23771897
UCUACUUCUAUUUCUGUUCCUGCUUCCCCCUGGCAGGUAAAUUUAAAUGCGAUUUGUUACGGUUUUGGCUUUUGUCGAAUUUCGUUGAAAGUCGCGUGCCCUUGCUGGGUUGGGAACUUG
.......................(((((((..(((((.........(((((((((...((((.((((((....))))))..))))...)))))))))...)))))..))..))))).... ( -37.30)
>DroSec_CAF1 1307 119 + 1
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCCUGGCAGGUAAAUUUAAAUGCGAUUUGUUACGGUUUUGGCUUUUGUCGAAUUUCGUUGAAAGUCGCGUGUCCUUGCUGGGU-GGGAACAUG
.........................(((((..(((((.........(((((((((...((((.((((((....))))))..))))...)))))))))...)))))..)).-)))...... ( -37.30)
>DroSim_CAF1 583 120 + 1
UCUACUUCUAUUUCUGUUCCUGCUUCCCCCUGGCAGGUAAAUUUAAAUGCGAUUUGUUACGGUUUUGGCUUUUGUCGAAUUUCGUUGAAAGUCGCGUGUCCUUGCUGGGUUGGGAACAUG
....................((.(((((((..(((((.........(((((((((...((((.((((((....))))))..))))...)))))))))...)))))..))..))))))).. ( -37.90)
>DroYak_CAF1 4738 120 + 1
UCUACUUCUAUUUCUGUUCCUGCAUUCCCCUGGCAGGUAAAUUUAAAUGCGAUUUGUUACGGUUUUGGCUUUUGUCGAAUUUCGUUGAAAGUCGCGUGUCCCUGCUGGGUUGGGAAUUUC
.......................(((((((..(((((.........(((((((((...((((.((((((....))))))..))))...)))))))))...)))))..)...))))))... ( -37.20)
>consensus
UCUACUUCUAUUUCUGUUCCUGCUUCCCCCUGGCAGGUAAAUUUAAAUGCGAUUUGUUACGGUUUUGGCUUUUGUCGAAUUUCGUUGAAAGUCGCGUGUCCUUGCUGGGUUGGGAACAUG
........................((((((..(((((.........(((((((((...((((.((((((....))))))..))))...)))))))))...)))))..))..))))..... (-36.05 = -35.92 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:24 2006