Locus 8615

Sequence ID 3L_DroMel_CAF1
Location 22,423,608 – 22,423,728
Length 120
Max. P 0.975874
window14113

overview

Window 3

Location 22,423,608 – 22,423,728
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -23.08
Consensus MFE -22.87
Energy contribution -22.65
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -2.54
Structure conservation index 0.99
SVM decision value 1.76
SVM RNA-class probability 0.975874
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22423608 120 + 23771897
UCCACAUCCUCACUCCCAUCCCCACGUCCUGCCGUCGUUGUCCUUUUCCAAUUGUCAUUCGCUUUUGUUUUAUGUGACUGCAGUUACCCACUCACUCAACGACGGUUAUUGUUGUUUUCA
.......................(((....((((((((((.........(((((.((.((((...........)))).)))))))...........))))))))))...)))........ ( -23.65)
>DroSec_CAF1 750 120 + 1
UCCACAUCCUCACUCCCAUCCACUCGUCCUGCCGUCGUUGUCCUUUUCCAAUUGUCAUUCGCUUUUGUUUUAUGUGACUGCAGUUACCCACUCACUCAGCGACGGUUAUUGUUGUUUUCA
.....................((.......((((((((((.........(((((.((.((((...........)))).)))))))...........)))))))))).......))..... ( -22.79)
>DroSim_CAF1 52 120 + 1
UCCACAUCCUCACUCCCAUCCACUCGUCCUGCCGUCGUUGUCCUUUUCCAAUUGUCAUUCGCUUUUGUUUUAUGUGACUGCAGUUACCCACUCACUCAGCGACGGUUAUUGUUGUUUUCA
.....................((.......((((((((((.........(((((.((.((((...........)))).)))))))...........)))))))))).......))..... ( -22.79)
>consensus
UCCACAUCCUCACUCCCAUCCACUCGUCCUGCCGUCGUUGUCCUUUUCCAAUUGUCAUUCGCUUUUGUUUUAUGUGACUGCAGUUACCCACUCACUCAGCGACGGUUAUUGUUGUUUUCA
..............................((((((((((.........(((((.((.((((...........)))).)))))))...........)))))))))).............. (-22.87 = -22.65 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:23 2006