| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,417,782 – 22,417,882 |
| Length | 100 |
| Max. P | 0.812325 |
| Location | 22,417,782 – 22,417,882 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 67.27 |
| Mean single sequence MFE | -29.41 |
| Consensus MFE | -11.60 |
| Energy contribution | -12.13 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.812325 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22417782 100 - 23771897 GUGCUUCUGCCAUGUGUGG--CCC-------GAACUUUUUCGGGGAAGGAGGACUUUCCUUC-CUUC---UCCUCCGGCGCUUUUCUCGCCCUGCACACACACUGGUUCACCC (((.....(((((((((((--(..-------..........(((((((((((......))))-))))---)))...((((.......))))..)).)))))).)))).))).. ( -39.20) >DroPse_CAF1 24959 100 - 1 GUGCUCUUGCCACAUGUGCUACGC-------GAACUGUUUCAGCCACCGUGCAACCCCCCCCAC------CCCCCCGCACCCACCCACCUCCUGGAUAAACAUUGGUGCCUCU ((((....).)))...(((.(((.-------...(((...)))....))))))...........------......(((((......((....)).........))))).... ( -14.46) >DroSec_CAF1 17130 103 - 1 GUACUUCUGCCAUGUGUGG--CCC-------GAACUUUUCCGGGGAAGGAGGACUUUCCUUC-CUCCUCCUCCUCCGGCGCUUUUUUCGCCCUGCACAAACACUGGCUCACCC ........((((((((..(--..(-------(((.....((((((.(((((((.........-.))))))).)))))).......))))..)..)))).....))))...... ( -36.90) >DroEre_CAF1 17075 103 - 1 GUACUUUUGCCAUGUGUGU--ACGGCUACGGGUACUUUUCCGGGGAAGGAGCGCUUUCCCAG-C------UCCUCCGGCGCUUUUCUCGCCCUGCACAAACACUGGUU-GCCC ........(((((((((((--(.(((..((((......))))((((((.((((((.......-.------......))))))))))))))).)))))..))).)))).-.... ( -34.34) >DroYak_CAF1 16824 97 - 1 GUGCUUUUGCCAUGUGUGU--GCC------GAAACUUUUCCGGAGAGGGAGGACUUUCCUUC-C------UCCUCCGGCGCUUUUCUCGCCCUGCAUAAACACUGGUU-GCCC ..((....((((.((((((--((.------(..........(((((((((((.....)))))-)------).))))((((.......))))).))))..)))))))).-)).. ( -37.10) >DroPer_CAF1 25997 99 - 1 GUGCUCUUGCCACAUGUGCUACGC-------GAACUGUUUCAGCCACCGUGCAACCCCUCAC-C------CCCCCCGCACCCACCCACCUCCUGGAUAAACAUUGGUGCCUCU ((((....).)))...(((.(((.-------...(((...)))....)))))).........-.------......(((((......((....)).........))))).... ( -14.46) >consensus GUGCUUUUGCCAUGUGUGC__CCC_______GAACUUUUCCGGGGAAGGAGCACUUUCCCUC_C______UCCUCCGGCGCUUUUCUCGCCCUGCACAAACACUGGUUCACCC ........((((.((((..................((((((......)))))).......................((((.......))))........))))))))...... (-11.60 = -12.13 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:22 2006