Locus 8613

Sequence ID 3L_DroMel_CAF1
Location 22,417,102 – 22,417,198
Length 96
Max. P 0.820593
window14111

overview

Window 1

Location 22,417,102 – 22,417,198
Length 96
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 69.67
Mean single sequence MFE -21.37
Consensus MFE -13.42
Energy contribution -13.87
Covariance contribution 0.45
Combinations/Pair 1.07
Mean z-score -1.37
Structure conservation index 0.63
SVM decision value 0.68
SVM RNA-class probability 0.820593
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22417102 96 - 23771897
GCACAUAAAUGGGUGG----U--AGCUGGUGCUUAGGCAGCCGAGGAACAAAGUGGCCAUAAAAAAGGAGCACAAAGGAGUCGAAAGAGUCAAACUGCAAGC
.(((........)))(----(--((...((((((.(((.((...........)).))).........))))))....((.((....)).))...)))).... ( -21.90)
>DroSec_CAF1 16444 102 - 1
GCACAAGAACGGGUGGGUGGUGGUGCUGGUGCUUAGGCAGCCGAGGAACAAAGUGGCCAUAAAAAAAGAGCAGAAAGGAAUCGAAAGAGCCGAACUGCAAGC
((((....((......))....))))....((((.(((.((...........)).)))...........((((...((..((....)).))...)))))))) ( -24.60)
>DroEre_CAF1 16469 75 - 1
GCGCAAGAAUGG-----------------UUGGU-GGUAGCU---------GGUGGCCAUAAAAAAGUGGCAGAGAGGAAUCGAAAGAGUCAAACUGCAAGC
..((....((((-----------------(((.(-((...))---------).))))))).........((((....((.((....)).))...))))..)) ( -17.60)
>consensus
GCACAAGAAUGGGUGG____U___GCUGGUGCUUAGGCAGCCGAGGAACAAAGUGGCCAUAAAAAAGGAGCAGAAAGGAAUCGAAAGAGUCAAACUGCAAGC
((.................................(((.((...........)).)))...........((((....((.((....)).))...))))..)) (-13.42 = -13.87 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:21 2006