| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,403,767 – 22,403,885 |
| Length | 118 |
| Max. P | 0.734200 |
| Location | 22,403,767 – 22,403,885 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.79 |
| Mean single sequence MFE | -22.43 |
| Consensus MFE | -20.79 |
| Energy contribution | -19.47 |
| Covariance contribution | -1.32 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.734200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22403767 118 - 23771897 U-UGUAAACAUACACUCCUACGAUGCUUUAGUUCAUUACUAUUGUUAGCAUGUAAUUUGUAAUUAUUUG-UAAGCAUUGGUUUUCCCAGCUUCCACAUAAAACAAUUGGUAUCGGAAUAA .-((((....))))......(((((((.((((.....))))(((((.(((.......)))..((((.((-.((((..(((.....))))))).)).)))))))))..)))))))...... ( -19.90) >DroSec_CAF1 3108 114 - 1 U-UGUACACAUAC-----CACGAUGCUUAAGUUUAUUACUAUUGUUAGCAUGUAAUUUGUAGUUACUUGUUAAGUAUUGGUUUUCCCGACUUCCACAUAAAACAAUUAGCAUCGGAACAA .-...........-----..(((((((...((((..........((((((.(((((.....))))).))))))...((((.....))))..........))))....)))))))...... ( -21.80) >DroSim_CAF1 3126 120 - 1 CAUGUUUACAUACACUCCUGCGAUGCUUAAGUUAAUUACUAUUGUUAGCAUGUAAUUUGUAGUUACUUGCUAAGCAUCGGUUUUCCCGACUUCCACAUAAAACAAUUGGCAUCGAAACAA ..(((((.((........))(((((((...(((.........((((((((.(((((.....))))).)))).))))((((.....))))...........)))....)))))))))))). ( -25.60) >consensus U_UGUAAACAUACACUCCUACGAUGCUUAAGUUAAUUACUAUUGUUAGCAUGUAAUUUGUAGUUACUUG_UAAGCAUUGGUUUUCCCGACUUCCACAUAAAACAAUUGGCAUCGGAACAA ....................(((((((...(((...........((((((.(((((.....))))).))))))...((((.....))))...........)))....)))))))...... (-20.79 = -19.47 + -1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:18 2006