| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,401,690 – 22,401,790 |
| Length | 100 |
| Max. P | 0.820482 |
| Location | 22,401,690 – 22,401,790 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 75.15 |
| Mean single sequence MFE | -37.54 |
| Consensus MFE | -17.60 |
| Energy contribution | -17.97 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820482 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22401690 100 + 23771897 GAACGCUGCCCUACCUGGCGGCACAUCCCGCACAGGCGCAGGCGCAGUACGCCCAGCCCUAUCACAACUACGGCUACGUGCCGUGAGCUCAGUGGCGAAU--------- ....((((((......))))))...((((((..(((.((.((((.....))))..)))))........((((((.....))))))......)))).))..--------- ( -38.40) >DroVir_CAF1 959 99 + 1 GCACGCUGCCCUAUCUGGCGGCGCAUCCGGCUCAA------GCGCAGUAUGCCCAAACUUAUCACAACUAUGGCUACGUUCCCUGAGCCGACUAA----GUUGUGCAUG ((((((((((......)))))).....(((((((.------(....(((.(((..................))))))....).))))))).....----...))))... ( -34.47) >DroPse_CAF1 5590 99 + 1 GGACGCUGCCCUACCUGGCGGCACAUCCGGCCCAG------GCGCAGUACGCCCAAACCUAUCACAACUACGGAUACGUUCCCUGAGCAAAGGGACAGGGC----CGGU ....((((((......))))))....(((((((.(------(((.....))))...((.((((.(......))))).))(((((......)))))..))))----))). ( -41.90) >DroEre_CAF1 947 94 + 1 GAACCCUGCCCUAUCUGGCGGCGCAUCCCGCCCAGG------CGCAGUACGCCCAGCCCUAUCACAACUACGGCUACGUGCCCUGAGCCAGGUUCCGGAU--------- ........((..(((((((((((.....))))((((------.((((((.(((..................)))))).))))))).)))))))...))..--------- ( -33.17) >DroAna_CAF1 923 97 + 1 GAACGCUGCCAUACUUGGCGGCGCACCCCGCGCAGGCGCAGGCGCAGUACGCUCAAACGUAUCACAACUACGGCUAUGUGCCCUGAGCAAAAUAAAG------------ ...((((((((....))))))))......((.(((((((((((((.....)).....((((.......))))))).)))).)))).)).........------------ ( -35.40) >DroPer_CAF1 5648 99 + 1 GGACGCUGCCCUACCUGGCGGCACAUCCGGCCCAG------GCGCAGUACGCCCAAACCUAUCACAACUACGGAUACGUUCCCUGAGCAAAGGGACAGGGC----CGGU ....((((((......))))))....(((((((.(------(((.....))))...((.((((.(......))))).))(((((......)))))..))))----))). ( -41.90) >consensus GAACGCUGCCCUACCUGGCGGCACAUCCCGCCCAG______GCGCAGUACGCCCAAACCUAUCACAACUACGGCUACGUGCCCUGAGCAAAGUGACGG_G_________ ....((((((......)))))).......((.(((......(((.....)))...................(((.....)))))).))..................... (-17.60 = -17.97 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:17 2006