Locus 8608

Sequence ID 3L_DroMel_CAF1
Location 22,399,835 – 22,399,935
Length 100
Max. P 0.799322
window14105

overview

Window 5

Location 22,399,835 – 22,399,935
Length 100
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 79.39
Mean single sequence MFE -33.48
Consensus MFE -20.32
Energy contribution -20.72
Covariance contribution 0.40
Combinations/Pair 1.21
Mean z-score -1.95
Structure conservation index 0.61
SVM decision value 0.61
SVM RNA-class probability 0.799322
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22399835 100 - 23771897
UUGCUCCAACGAGUAUGAGUCGC-CCAUCGAUUGGCGCUGAGCUGUGCUUAGUUGGAGCUGGGAAUUUUCACUUUUAGGCAUUUCUCGCCCAGUGACUCAC
..(((((((((((((((..((((-(((.....))).)).))..))))))).))))))))((((.....(((((....(((.......))).))))))))). ( -34.50)
>DroSec_CAF1 49955 101 - 1
UGGCUCCAAUGAGUAUGAGUCGCCCCAUCGAUUGGCGCUGAGCUGGGCAUAGUUGGAGCGGGGAAUUUUCACUUUUAGGCAUUUCUCGCCCAGUGACUCAC
..((((....)))).((((((((.(((.....))).))...(((((((...((....))(((((((.((........)).)))))))))))))))))))). ( -34.50)
>DroSim_CAF1 65101 101 - 1
UUGCUCCAACGAGUAUGAGUCGCCCCAUCGAUUGGCGCUGAGCUGGGCUCAGUUGGAGCGGGGAAUUUUCACUUUUAGGCAUUUCUCGCCCAGUGACUCAC
.(((((....)))))((((((((.(((.....))).(((((((...)))))))(((.(((((((((.((........)).)))))))))))))))))))). ( -38.40)
>DroEre_CAF1 66277 100 - 1
UUGCUCCAACGAGUGUGAGUCGC-CCAUCGAUUGGCGCUGAGCUGGGCCCAGUUGAAGCUGGGAAUUUUCACUUUUAGGCAUAUCUCGGCCAGUGACUCAC
..((((....))))(((((((((-(........)))((((.((((((((((((....))))))........((....)).....))))))))))))))))) ( -37.80)
>DroAna_CAF1 9336 80 - 1
UUGCU------GGUUUCAAGCGCAUCUUCGGCUG---------------CAGUCAUCGUUGGGAAUUUUCACUUUUAGGGAUUUCUCAUUCAGUGACUCAU
..(((------.......)))(((.(....).))---------------)((((((.(.((((((.(..(.......)..).))))))..).))))))... ( -22.20)
>consensus
UUGCUCCAACGAGUAUGAGUCGC_CCAUCGAUUGGCGCUGAGCUGGGCUCAGUUGGAGCUGGGAAUUUUCACUUUUAGGCAUUUCUCGCCCAGUGACUCAC
..((((....)))).((((((((....(((((((((.(......).)).)))))))....(((((.(..(.......)..).))))).....)))))))). (-20.32 = -20.72 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:15 2006