Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,397,331 – 22,397,448 |
Length | 117 |
Max. P | 0.672150 |
Location | 22,397,331 – 22,397,448 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 86.90 |
Mean single sequence MFE | -37.60 |
Consensus MFE | -33.90 |
Energy contribution | -33.24 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.09 |
Mean z-score | -1.49 |
Structure conservation index | 0.90 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.672150 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22397331 117 - 23771897 UUGGAAUCUUUAUCGGAUCGGAUGGGAUCGAAUUGAAUGGCAUCGGAUCGGGUUGGACUGGCAUGAGUUCCUCAUUGCAUACUGCGUCGCAGCUCGCCCGCCCAUUUGCGUCCGAUU ...........(((((((((((((((...((.((((......)))).))((((.((....(((((((...)))).)))...((((...)))))).)))).)))))))).))))))). ( -38.50) >DroSec_CAF1 48346 98 - 1 UUGGAAUCUUUAUCGGAUCGGAUGGGAU---------------CGGAUCGGGUUGGACUGGCAUGAGUUCCUCAUUGCAUACUGCGUCGCAGCUCG----CCCAUUUGCAUCCGAUU ...........(((((((((((((((..---------------.....((((((((((....(((((...))))).((.....))))).)))))))----)))))))).))))))). ( -34.91) >DroSim_CAF1 63427 102 - 1 UUGGAAUCUUUAUCGGAUCGGAUGGGAU---------------CGGAUCGGGUUGGACUGGCAUGAGUUCCUCAUUGCAUACUGCGUCGCAGCUCGCCCGCCCAUCUGCGUUCGAUU ...........(((((((((((((((..---------------(((..((((((((((....(((((...))))).((.....))))).))))))).))))))))))).))))))). ( -39.40) >consensus UUGGAAUCUUUAUCGGAUCGGAUGGGAU_______________CGGAUCGGGUUGGACUGGCAUGAGUUCCUCAUUGCAUACUGCGUCGCAGCUCGCCCGCCCAUUUGCGUCCGAUU ...........(((((((((((((((......................((((((((((....(((((...))))).((.....))))).)))))))....)))))))).))))))). (-33.90 = -33.24 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:14 2006