| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,396,920 – 22,397,013 |
| Length | 93 |
| Max. P | 0.651630 |
| Location | 22,396,920 – 22,397,013 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 91.23 |
| Mean single sequence MFE | -23.08 |
| Consensus MFE | -17.00 |
| Energy contribution | -17.56 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651630 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22396920 93 - 23771897 GCCAAUAAUAAAUUUUGAUUUAGUGUCGCCGCAGUCGAAGGUGUCACUAAAUGAGA--UCUCUGUCAUAUAAAACCAGAAACCUUAUGAUCAGAC .............(((.((((((((.((((.........)))).)))))))).)))--..(((((((((...............))))).)))). ( -23.06) >DroSec_CAF1 47933 95 - 1 GCAAAUAAUAAAUUUUGAUUUAGUGUCGCCGCAGUCGAAGGUGUCACUAAAUGAGAAUCCGCUGCCAUAUAAAACCAGAAACCUUAUGAUCAGCC ...........(((((.((((((((.((((.........)))).)))))))).)))))..((((.((((...............))))..)))). ( -23.66) >DroSim_CAF1 63021 95 - 1 GCCAAUAAUAAAUUUUGAUUUAGUGUCGCCGCAGUCGAAGGUGUCACUAAAUGAGAAUCCGCUGCCAUAUAAAACCAGAAACCUUAUGAUCAGCC ...........(((((.((((((((.((((.........)))).)))))))).)))))..((((.((((...............))))..)))). ( -23.66) >DroEre_CAF1 63920 94 - 1 GUCAAUAAUAAAUUUUGAUCUAGUGUCGCCGCAGUCGAAGGUGUCACUAAAGGAGGUCCCACUGCCAUAUAAAAUCGGAAACCUUACGAUCAG-C ..............(((((((((((.((((.........)))).)))))((((...(((.................)))..))))..))))))-. ( -21.93) >consensus GCCAAUAAUAAAUUUUGAUUUAGUGUCGCCGCAGUCGAAGGUGUCACUAAAUGAGAAUCCGCUGCCAUAUAAAACCAGAAACCUUAUGAUCAGCC .............(((.((((((((.((((.........)))).)))))))).)))....((((.((((...............))))..)))). (-17.00 = -17.56 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:13 2006