Locus 8605

Sequence ID 3L_DroMel_CAF1
Location 22,396,203 – 22,396,306
Length 103
Max. P 0.619482
window14102

overview

Window 2

Location 22,396,203 – 22,396,306
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 72.92
Mean single sequence MFE -28.75
Consensus MFE -8.74
Energy contribution -9.10
Covariance contribution 0.36
Combinations/Pair 1.21
Mean z-score -2.15
Structure conservation index 0.30
SVM decision value 0.18
SVM RNA-class probability 0.619482
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22396203 103 - 23771897
AUGUAAAUUGAGCAGUUGC--AAAUUGCCAUAAAGAAGUCCGAUUCGUAGUG--CAAAUACAAAGUGGCCAUAAACUGGCUGCAGUUUAUGUACUGCGGCU-----CCAGCC--------
........((.(((((...--..))))))).......((..((..(((((((--((...((...(..((((.....))))..).))...)))))))))..)-----)..)).-------- ( -28.60)
>DroVir_CAF1 7914 111 - 1
AUGUAAAUUGAACAGUUGA--AAACUGCCAUAAAGAAGCUCCAUUGGCUGUA--AAAAUACAAAGUGGCCAUAAACUUGCAACAGUUUAUGAACUGCAUUU-----GCAGUGUACCAGCC
..............((((.--.....(((((.....((((.....))))(((--....)))...)))))((((((((......)))))))).(((((....-----)))))....)))). ( -25.10)
>DroGri_CAF1 9877 107 - 1
AUGUAAAUUGAGCAGUUUGCCAGACGUGCAUAAAGUUGCACAAUUCGCAGUGCGAAUAUACAAAGUGGCCAUAAACUUGCCACACUUUAUGAACUGCAUUU-----GCAGUU--------
.(((((((...(((((((.......(((((......))))).((((((...)))))).......(((((.........))))).......)))))))))))-----)))...-------- ( -32.60)
>DroEre_CAF1 63275 103 - 1
AUGUAAAUUGAGCAGUUGA--AAAUUGCCAUAAAGAAGUCCGAUUCGUAGUG--CAAAUACAAAGUGGCCAUAAACUGGCUGCAGUUUAUGCACUGCGAGU-----CCAGCC--------
........((.(((((...--..))))))).......((..(((((((((((--((...((...(..((((.....))))..).))...))))))))))))-----)..)).-------- ( -35.10)
>DroMoj_CAF1 8714 111 - 1
AUGUAAAUUGAGAGGUUGA--AAAUUGCCAUAAAGAAGCUAUAUGCGCUGUA--AGACUACAAAGUGGCCAUAAAGUCGCUGCAGUUUAUGGGCAGCAUUU-----GCAGAGCAACAUGC
((((.........(((...--.....)))........(((...((((((((.--(((((....((((((......))))))..)))))....)))))....-----))).))).)))).. ( -26.80)
>DroAna_CAF1 6329 108 - 1
AUGUAAAUCGAGCAGUUUG--AAGUUUCCAUAAAGAAGCCAGAUUCGAAGUG--CAAAUACAAAGUGGCCAUAAACUAACUCCACUUUAUGCACUGCGGCCCAGGUCCGACU--------
.......((((...(((((--..(((((......))))))))))))))((((--((.....(((((((.............))))))).)))))).((((....).)))...-------- ( -24.32)
>consensus
AUGUAAAUUGAGCAGUUGA__AAAUUGCCAUAAAGAAGCCCGAUUCGCAGUG__AAAAUACAAAGUGGCCAUAAACUGGCUGCAGUUUAUGAACUGCAUUU_____CCAGCC________
...........(((((............((((((...............(((......)))...(((((.........)))))..)))))).)))))....................... ( -8.74 =  -9.10 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:12 2006