Locus 8604

Sequence ID 3L_DroMel_CAF1
Location 22,394,988 – 22,395,089
Length 101
Max. P 0.767469
window14101

overview

Window 1

Location 22,394,988 – 22,395,089
Length 101
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 85.21
Mean single sequence MFE -43.57
Consensus MFE -33.38
Energy contribution -35.94
Covariance contribution 2.56
Combinations/Pair 1.07
Mean z-score -2.15
Structure conservation index 0.77
SVM decision value 0.52
SVM RNA-class probability 0.767469
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22394988 101 + 23771897
ACAGCCGUUCGCCUCUGGCCCGCUGGAGUGUCAGCGCACCAUGUUCCACGCUCUACGCUCUACGGUCUUCCGUUUGCGGUCUAC--------------CGUCUACGGUCUUCGGA
...((((........))))(((.((((((((.((((............))))..)))))))))))....((((..((((....)--------------)))..))))((....)) ( -33.90)
>DroSec_CAF1 46057 108 + 1
ACAGCCGUUCGCCUCUGGCCCGCUGGAGUGUCUGCGCACCA-------CGCUCCACGCUCUACGGUCUUCCGUUUGCGGUCUACGAUCUGCGGGCUACGGCCUACGGUCUUCGGA
...(((((..(((..((((((((((((((((.........)-------)))))))(((...((((....))))..)))...........)))))))).)))..)))))(....). ( -48.40)
>DroSim_CAF1 61052 108 + 1
ACAGCCGUUCGCCUCUGGCCCGCUGGAGUGUCUGCGCACCA-------CGCUCCACGCUCUACGGUCUUCCGUUUGCGGUCUACGAUCUGCGGGCUACGGCCUACGGUCUUCGGA
...(((((..(((..((((((((((((((((.........)-------)))))))(((...((((....))))..)))...........)))))))).)))..)))))(....). ( -48.40)
>consensus
ACAGCCGUUCGCCUCUGGCCCGCUGGAGUGUCUGCGCACCA_______CGCUCCACGCUCUACGGUCUUCCGUUUGCGGUCUACGAUCUGCGGGCUACGGCCUACGGUCUUCGGA
...(((((..(((..(((((((((((((((..................)))))))(((...((((....))))..)))...........)))))))).)))..)))))....... (-33.38 = -35.94 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:11 2006