| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,394,159 – 22,394,279 |
| Length | 120 |
| Max. P | 0.689881 |
| Location | 22,394,159 – 22,394,279 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.78 |
| Mean single sequence MFE | -46.47 |
| Consensus MFE | -26.40 |
| Energy contribution | -27.65 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.689881 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22394159 120 - 23771897 GUGGCCGUGGUGGAGAUCAUGCGGAUCUGCAAGCGCUUCCGCACCAGGCUCUACUUCCGCAAUCUGUGGCGCGCAGAGGCCACCUUCAGCUUCGGCUUCAUAGCCACCUAUCUCACCACC (((((((((((((((....((((((...((....)).)))))).....)))))...))))..((((((...))))))))))))..........((((....))))............... ( -45.30) >DroVir_CAF1 6186 120 - 1 AUCUGCGUCGUGGAAAUAAUGCGGAGCUGUCGGCAUUUGCGCAUGCGGCAAUAUUUGCGGAAUCUGUGGCGCGCGCAGGCAACGUUCAGCUUUGGCUUCAUCGCCACCUUCUUGACCACG .(((((((..(....)..)))))))((((.((...(((((((.(((.(((..............))).))).)))))))...))..))))..((((......)))).............. ( -39.04) >DroGri_CAF1 7588 120 - 1 AUCAGCGUCGUGGAAAUCAUGCGCAUCUGUCGCCAGCUGCGCAUGCGUCGCUAUAUGCGCAACUUGUGGCGCUCUGAGGCGACGUUCAGCUUUGGCUUCAUUGCCACCUUCCUGACCACG ........(((((....((((((((.(((....))).))))))))(((((((....((((........)))).....))))))).((((...((((......)))).....))))))))) ( -48.30) >DroMoj_CAF1 6896 120 - 1 AUCAGCGUGGUGGAGAUAAUGCGCCGCUGCAGGCACCUGCGCAUGCGGAAAUACCUGCGCAAUCUGUGGCGCUCGCAGGCGACGUUCAGCUUCGGCUUCAUCGCCACCUUCCUGACCACG .....((((((((((.....(((((((.((((....))))((..((((......)))))).....))))))).....(((((.(...(((....))).).)))))...))))..)))))) ( -51.90) >DroAna_CAF1 3883 120 - 1 CUAGCCGUGGCGGAGAUCAUGCGCAUUUGCAAGCGAUUCCGCACCCGGCUUUACCUGCGCAACCUGUGGCGUGCCGAGGCCACCUUUAGCUUCGGCUUCAUCGCCACCUACCUGACCACG .....((((((((......((((((.......(((....)))....((.....))))))))....((((((.((((((((........)))))))).....))))))....))).))))) ( -48.30) >DroPer_CAF1 103647 120 - 1 AUCAGCGUGGUGGAGAUCAUGCGCAUCUGCAAGCGCUUCCGCAUGCGGCUCUACCUGCGCAACCUGUGGCGCUCCCAGGCCACGUUCAGCUUCGGCUUCAUCGCCACCUUCCUCACCACG .....(((((((..((...((((((...(((.(((....))).)))((.....))))))))....((((((((....))).......(((....))).....)))))..))..))))))) ( -46.00) >consensus AUCAGCGUGGUGGAGAUCAUGCGCAUCUGCAAGCACUUCCGCAUGCGGCUCUACCUGCGCAACCUGUGGCGCGCCCAGGCCACGUUCAGCUUCGGCUUCAUCGCCACCUUCCUGACCACG .....((((((((((....((((((.((((..((......))..)))).......))))))....(((((((......)).......(((....))).....))))).))))..)))))) (-26.40 = -27.65 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:10 2006