Locus 8602

Sequence ID 3L_DroMel_CAF1
Location 22,393,061 – 22,393,171
Length 110
Max. P 0.500000
window14099

overview

Window 9

Location 22,393,061 – 22,393,171
Length 110
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 83.13
Mean single sequence MFE -38.98
Consensus MFE -24.38
Energy contribution -26.86
Covariance contribution 2.48
Combinations/Pair 1.26
Mean z-score -1.74
Structure conservation index 0.63
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22393061 110 - 23771897
AAUUGUUUCGGCCUUCAACGGCUUAUUGCUCGAUGGCG--AUUACG------AGAAUUUCGGCUAUGGGUGAGUAUCUCGCCAAAAGUAUCUGCCGCUGAUAUUGCAAGGCCGGAUCG
....(.(((((((((((.((((....((((...(((((--....)(------(((..((((.(....).))))..))))))))..))))...)))).))).......)))))))).). ( -36.31)
>DroSec_CAF1 44107 112 - 1
AAUCGGUUCGGCCUUCGACGGCUUAUUGCUCGAUGGCGAGAUCACG------AGAAUUUCGGCUAUGCGCGAGUAUCUCGCCAAAAGUAUCUGCCGCUGAUAUUGCAAGGCCGGAUCG
...(((((((((((((((((((....((((...((((((((...((------((...))))....(((....)))))))))))..))))...))))......))).)))))))))))) ( -46.90)
>DroSim_CAF1 59078 112 - 1
AAUCGGUUCGGCCUUCGACGGCUUAUUGCUCGAUGGCGAGAUCACG------AGAAUUUCGGCUAUGCGCGAGUAUCUCGCCAAAAGUAUCUGCCGCUGAUAUUGCAAGGCCGGAUCG
...(((((((((((((((((((....((((...((((((((...((------((...))))....(((....)))))))))))..))))...))))......))).)))))))))))) ( -46.90)
>DroEre_CAF1 60230 101 - 1
---------------CGACAGCUUGUUGCCCCACGGUG--AUCAUGAUCCCGAGAAUUUCGGCUGCGCGGGAGUAUCUCGCCAAAAGUAUUUGCCGCUGAUAUUGCAAGGCCGGAUCG
---------------((((.....)))).....(((.(--((....)))))).((..((((((((((((((.....)))))....((((((.......))))))))..))))))))). ( -27.20)
>DroYak_CAF1 62175 110 - 1
AAUCGAUACGGCCUUCGACGGCUGGUUGCUCGAUGGUG--AUCAUG------AGAAUUUUGGCUAUGCGCUAGUAUCUCGCCAAAAGAAUCUGCCGCUGAUAUUGCAAGGCCGGAUUG
...((((.((((((((((((((((((..((....))..--)))).(------(...(((((((.((((....))))...)))))))...)).))))......))).))))))).)))) ( -37.60)
>consensus
AAUCGGUUCGGCCUUCGACGGCUUAUUGCUCGAUGGCG__AUCACG______AGAAUUUCGGCUAUGCGCGAGUAUCUCGCCAAAAGUAUCUGCCGCUGAUAUUGCAAGGCCGGAUCG
...(((((((((((((((((((.....(((....))).......................(((.(((((((((...))))).....))))..)))))))...))).)))))))))))) (-24.38 = -26.86 +   2.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:09 2006