| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,387,539 – 22,387,657 |
| Length | 118 |
| Max. P | 0.994229 |
| Location | 22,387,539 – 22,387,657 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.23 |
| Mean single sequence MFE | -37.89 |
| Consensus MFE | -32.76 |
| Energy contribution | -32.10 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.95 |
| Structure conservation index | 0.86 |
| SVM decision value | 2.46 |
| SVM RNA-class probability | 0.994229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22387539 118 + 23771897 UCCAGUUCUGGGUUCCGACCAAAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGUCGCAUAAUUGCUGACUUCUUUCACACAUUCGCACACAUCAUUGAAGCGGGAU--GGACUGG .(((((((...((((((..(((((((((((((....((..((....(((...........))).....))..))....))))))))))...........)))...))))))--))))))) ( -36.20) >DroPse_CAF1 93238 120 + 1 UCCAGUUCUGGGUUCCGUCCACAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGCCGCAUAAUUGCUGACUUCUUUCACACAUUCACACACAUCAUUGGACUGGUCAGAGGAUUGG .((((((((..(..(((((((.((((((((((....((..((....(((...........))).....))..))....))))))))))............))))).)).)..)))))))) ( -37.12) >DroSec_CAF1 38662 118 + 1 UCCAGUUCUGGGCUCCGACCAAAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGCCGCAUAAUUGCUGACUUCUUUCACACAUUCGCACACAUCAUUGGAGCGGGAU--GGACUGG .(((((((...(((((((....((((((((((....((..((....(((...........))).....))..))....)))))))))).(....)....))))))).....--))))))) ( -38.60) >DroEre_CAF1 54949 118 + 1 UCCAGUUUGGGGCUCCGACCGAAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGCCGCAUAAUUGCUGACUUCUUUCACACAUUCGCACACAUCAUUGGAGCGGCAU--GGACUGG .(((((..(..(((((((.((((.((((((((....((..((....(((...........))).....))..))....)))))))))))).........)))))))....)--..))))) ( -39.10) >DroYak_CAF1 55182 118 + 1 UCCAGUUUUGGGCUCCGACCAAAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGCCGCAUAAUUGCUGACUUCUUUCACACAUUCGCACACAUCAUUGGAGCGGGCU--GAGCUGG .(((((((..(((.(((.((((((((((((((....((..((....(((...........))).....))..))....))))))))))...........))))..))))))--))))))) ( -39.20) >DroPer_CAF1 95833 120 + 1 UCCAGUUCUGGGUUCCGUCCACAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGCCGCAUAAUUGCUGACUUCUUUCACACAUUCACACACAUCAUUGGACUGGUCAGAGGAUUGG .((((((((..(..(((((((.((((((((((....((..((....(((...........))).....))..))....))))))))))............))))).)).)..)))))))) ( -37.12) >consensus UCCAGUUCUGGGCUCCGACCAAAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGCCGCAUAAUUGCUGACUUCUUUCACACAUUCGCACACAUCAUUGGAGCGGGAU__GGACUGG .((((((((((.......))).((((((((((....((..((....(((...........))).....))..))....))))))))))(((...((....))..)))......))))))) (-32.76 = -32.10 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:06 2006