Locus 860

Sequence ID 3L_DroMel_CAF1
Location 2,603,505 – 2,603,600
Length 95
Max. P 0.999784
window1323

overview

Window 3

Location 2,603,505 – 2,603,600
Length 95
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 92.16
Mean single sequence MFE -29.95
Consensus MFE -28.73
Energy contribution -28.37
Covariance contribution -0.36
Combinations/Pair 1.07
Mean z-score -2.50
Structure conservation index 0.96
SVM decision value 4.07
SVM RNA-class probability 0.999784
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2603505 95 + 23771897
--CCGC--CCAC------------CGGAAGGAAAACGUUGUCGUUAAUGUUGUCGUUAUGUAAGCUAACCCAGUUUUAGCGUCGACAUGGCAUUUCCUUCCUUCCUGUUCC
--....--..((------------.(((((((((((((((....)))))))...(((((((..(((((.......)))))....)))))))......)))))))).))... ( -28.50)
>DroPse_CAF1 6597 109 + 1
CCCCGC--CGACCCCCUGUUUGAGAGGAAGGAAAACGUUGUCGUUAAUGUUGUCGUUAUGUAAGCUAACCCAGUUUUAGCGUCGACAUGGCAUUUCCUUCCUUCCUGUUUC
......--.............(..((((((((((((((((....)))))))...(((((((..(((((.......)))))....)))))))..)))))))))..)...... ( -31.20)
>DroSec_CAF1 1848 97 + 1
--CCCCCCCCCC------------CGGAAGGAAAACGUUGUCGUUAAUGUUGUCGUUAUGUAAGCUAACCCAGUUUUAGCGUCGACAUGGCAUUUCCUUCCUUCCUGUUCC
--..........------------.(((((((((((((((....)))))))...(((((((..(((((.......)))))....)))))))..)))))))).......... ( -28.40)
>DroSim_CAF1 4281 95 + 1
--CCGC--CCAC------------CGGAAGGAAAACGUUGUCGUUAAUGUUGUCGUUAUGUAAGCUAACCCAGUUUUAGCGUCGACAUGGCAUUUCCUUCCUUCCUGUUCC
--....--..((------------.(((((((((((((((....)))))))...(((((((..(((((.......)))))....)))))))......)))))))).))... ( -28.50)
>DroEre_CAF1 1840 95 + 1
--CCGC--CCAC------------CGGAAGGAAAGCGUUGUCGUUAAUGUUGUCGUUAUGUAAGCUAACCCAGUUUUAGCGUCGACAUGGCAUUUCCUUCCUUCCUGUUCC
--....--....------------.(((((((((((((((.((((((..(((..((((.(....))))).)))..)))))).))))...)).))))))))).......... ( -28.50)
>DroYak_CAF1 4826 95 + 1
--CCGC--CCAC------------CGGAAGGAAGGCGUUGUCGUUAAUGUUGUCGUUAUGUAAGCUAACCCAGUUUUAGCGUCGACAUGGCAUUUCCUUCCUUCCUGUUCC
--....--..((------------.((((((((((...((((....((((((.(((((...(((((.....)))))))))).))))))))))...)))))))))).))... ( -34.60)
>consensus
__CCGC__CCAC____________CGGAAGGAAAACGUUGUCGUUAAUGUUGUCGUUAUGUAAGCUAACCCAGUUUUAGCGUCGACAUGGCAUUUCCUUCCUUCCUGUUCC
.........................(((((((((((((((....)))))))...(((((((..(((((.......)))))....)))))))..)))))))).......... (-28.73 = -28.37 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:58 2006