Locus 86

Sequence ID 3L_DroMel_CAF1
Location 317,766 – 317,886
Length 120
Max. P 0.683535
window122

overview

Window 2

Location 317,766 – 317,886
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -42.70
Consensus MFE -42.70
Energy contribution -42.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 1.00
SVM decision value 0.31
SVM RNA-class probability 0.683535
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 317766 120 + 23771897
UACUUCUGUUUAGUAGCUACAAAGACGCGACCGGACUGAGUCACCGAGCUAGGCGGCUGGAGAUUCAGUGCUGUGUUGGCUGUCAGUGUUCGGUUUAGAGUUAGUCUGCAGGCAGUGUCU
((((.......)))).......((((((..(((((((((.(((((((((..((((((..(.....((....))..)..))))))...)))))))...)).)))))))...))..)))))) ( -42.70)
>DroSec_CAF1 761 120 + 1
UACUUCUGUUUAGUAGCUACAAAGACGCGACCGGACUGAGUCACCGAGCUAGGCGGCUGGAGAUUCAGUGCUGUGUUGGCUGUCAGUGUUCGGUUUAGAGUUAGUCUGCAGGCAGUGUCU
((((.......)))).......((((((..(((((((((.(((((((((..((((((..(.....((....))..)..))))))...)))))))...)).)))))))...))..)))))) ( -42.70)
>DroSim_CAF1 761 120 + 1
UACUUCUGUUUAGUAGCUACAAAGACGCGACCGGACUGAGUCACCGAGCUAGGCGGCUGGAGAUUCAGUGCUGUGUUGGCUGUCAGUGUUCGGUUUAGAGUUAGUCUGCAGGCAGUGUCU
((((.......)))).......((((((..(((((((((.(((((((((..((((((..(.....((....))..)..))))))...)))))))...)).)))))))...))..)))))) ( -42.70)
>consensus
UACUUCUGUUUAGUAGCUACAAAGACGCGACCGGACUGAGUCACCGAGCUAGGCGGCUGGAGAUUCAGUGCUGUGUUGGCUGUCAGUGUUCGGUUUAGAGUUAGUCUGCAGGCAGUGUCU
((((.......)))).......((((((..(((((((((.(((((((((..((((((..(.....((....))..)..))))))...)))))))...)).)))))))...))..)))))) (-42.70 = -42.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:59 2006