| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,386,779 – 22,386,875 |
| Length | 96 |
| Max. P | 0.561004 |
| Location | 22,386,779 – 22,386,875 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 82.89 |
| Mean single sequence MFE | -22.09 |
| Consensus MFE | -15.55 |
| Energy contribution | -16.25 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.561004 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22386779 96 + 23771897 ---------UGUCCUUUCUCCAC---UCGC-UUCGUGGCCCGGCUAAUAAUGCUUUUGCAUAUAAUCAAGCAGCCCAUGCAUGACCUCUCCAUGGCCACAUC----UCGGGCU ---------.((((.....((((---....-...))))...(((((...((((....))))....(((.(((.....))).)))........))))).....----..)))). ( -25.00) >DroSec_CAF1 37904 96 + 1 ---------UGUCCUUUCUCCAC---UCGC-UUCGUGGUCCGGCUAAUAAUGCUUUUGCAUAUAAUCAAGCAGCCCAUGCAUGACCUCUCCAUGGCCACAUC----UCGGGCU ---------.((((.....((((---....-...))))...(((((...((((....))))....(((.(((.....))).)))........))))).....----..)))). ( -25.20) >DroSim_CAF1 53488 96 + 1 ---------UGUCCUUUCUCCAC---UCGC-UUCGUGGUCCGGCUAAUAAUGCUUUUGCAUAUAAUCAAGCAGCCCAUGCAUGACCUCUCCAUGGCCACAUC----UCGGGCU ---------.((((.....((((---....-...))))...(((((...((((....))))....(((.(((.....))).)))........))))).....----..)))). ( -25.20) >DroEre_CAF1 54179 91 + 1 ---------UGUCCUUUCUCCAC---------UCGUGGCCCGGCUAAUAAUGCUUUUGCAUAUAAUCAAGUAGCCCAUGCAUGACCUAUCCAUGGCAACAUC----UCGGGCU ---------..............---------....(((((((......((((....))))........((.(((.(((.(((...))).)))))).))...----))))))) ( -20.70) >DroYak_CAF1 54435 100 + 1 ---------UGUCCUUUCUCCAU---UCAC-UUCGUGGCCCGGCUAAUAAUGCUUUUGCAUAUAAUCAACCAGCCCAUGUAUGACCUUUUCAUGGCCACAUCCUCCUCGGGCU ---------.((((.......(.---....-.).((((((.((((....((((....))))..........)))).....((((.....)))))))))).........)))). ( -19.74) >DroPer_CAF1 94898 108 + 1 GCUGCCUUCUGUCCUCUCCCUCCUGCUAGCUUUCAGCGCCUGGCUAAUAAUGCU-UUGCAUAUAAUCAAGCAGCCCAUGCAUGACCUUACUCCGUCUCCGUC----UCCGUCU (((((...................(((.......)))((..(((.......)))-..))..........)))))........(((........)))......----....... ( -16.70) >consensus _________UGUCCUUUCUCCAC___UCGC_UUCGUGGCCCGGCUAAUAAUGCUUUUGCAUAUAAUCAAGCAGCCCAUGCAUGACCUCUCCAUGGCCACAUC____UCGGGCU ..........((((.....((((...........))))...(((((...((((....))))....(((.(((.....))).)))........)))))...........)))). (-15.55 = -16.25 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:20:00 2006