| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,381,103 – 22,381,217 |
| Length | 114 |
| Max. P | 0.853532 |
| Location | 22,381,103 – 22,381,217 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 75.90 |
| Mean single sequence MFE | -19.35 |
| Consensus MFE | -11.11 |
| Energy contribution | -10.56 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22381103 114 - 23771897 AAGCUCUAUUAUAGUAUACCAAUGGAAACAAUUUACGUUUAACGUGUUUAAACAUAAUCCUAUGCAAUCCUAUGUAAAGUGUAAACUAAUUUUCUUUCUUUGGUGGAGUUUAUU (((((((((((.((........((....)).(((((((((.(((((......((((....))))......))))).)))))))))............)).)))))))))))... ( -21.40) >DroSec_CAF1 32279 89 - 1 AAGCUCUAUUAUGGUAUACCAAUGCAAACUAUUUAUGCUUAACUUGUUUAAACAUAAUCCUAU----------GUAAAUU---------------UUUUUUGGUAGAGUUUUCU ((((((((((((((....))).((((......(((((.((((.....)))).))))).....)----------)))....---------------.....)))))))))))... ( -16.80) >DroSim_CAF1 47818 104 - 1 AAGCUUUACUAUGGUAUACCAAUGCAAACUAUUUACGCUUAACUUGUUUAAACAUAAUCCUAU----------GUAAAGUGUAAACUAAAUUUCCUUCUUUGGUAAAGUUUUCU ((((((((((((((....)))..........(((((((((.((....................----------)).)))))))))...............)))))))))))... ( -19.85) >consensus AAGCUCUAUUAUGGUAUACCAAUGCAAACUAUUUACGCUUAACUUGUUUAAACAUAAUCCUAU__________GUAAAGUGUAAACUAA_UUUC_UUCUUUGGUAGAGUUUUCU ((((((((((((((....)))(((.((((................))))...))).............................................)))))))))))... (-11.11 = -10.56 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:52 2006