Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,375,261 – 22,375,355 |
Length | 94 |
Max. P | 0.517932 |
Location | 22,375,261 – 22,375,355 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.99 |
Mean single sequence MFE | -21.25 |
Consensus MFE | -18.51 |
Energy contribution | -18.07 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.38 |
Structure conservation index | 0.87 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517932 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22375261 94 - 23771897 CUGCGUCGCAAAAGCAUUUGAUUUAAAUUGAGUUUGCGAAAAU-UUCGUUGAUUUGAUUGAAGCAACUAAACUUGCACCAAGCGGAACCAACUAU------------------------- ((((.(((((((..((.((......)).))..)))))))....-.............(((..((((......))))..)))))))..........------------------------- ( -19.90) >DroPse_CAF1 78266 95 - 1 CUGCGACGCAAAAGCAUUUGAUUUAAAUUGAGUUUGCGAAAAUUUUCGUUGAUUUGAUUGAAGCAACUAAACUUGCACCAACCGAAACCAACUAU------------------------- ......((((((..((.((......)).))..)))))).........((((.((((.(((..((((......))))..))).))))..))))...------------------------- ( -18.90) >DroSim_CAF1 40828 94 - 1 CUGCGUCGCAAAAGCAUUUGAUUUAAAUUGAGUUUGCGAAAAU-UUCGUUGAUUUGAUUGAAGCAACUAAACUUGCACCAAGCGGAACCAACUAU------------------------- ((((.(((((((..((.((......)).))..)))))))....-.............(((..((((......))))..)))))))..........------------------------- ( -19.90) >DroEre_CAF1 42806 94 - 1 CUGCGUUGCAAAAGCAUUUGAUUUAAAUUGAGUUUGCGAAAAU-UUCGUUGAUUUGAUUGAAGCAACUAAACUUGCACCAAGCGGAACCAACUAU------------------------- ((((..(((((......(((.....(((..((((.((((....-.)))).))))..)))....)))......)))))....))))..........------------------------- ( -19.90) >DroYak_CAF1 36219 119 - 1 CUGCGUUGCAAAAGCAUUUGAUUUAAAUUGAGUUUGCGAAAAU-UUCGUUGAUUUGAUUGAAGCAACUAAACUUGCACCAAGCGGAGCCAACUAUAGCUCAACAACGAAACAAGCAAACG .(((.(((((((..((.((......)).))..)))))))...(-(((((((...((.(((..((((......))))..))).))((((........))))..))))))))...))).... ( -30.00) >DroPer_CAF1 80981 95 - 1 CUGCGACGCAAAAGCAUUUGAUUUAAAUUGAGUUUGCGAAAAUUUUCGUUGAUUUGAUUGAAGCAACUAAACUUGCACCAACCGAAACCAACUAU------------------------- ......((((((..((.((......)).))..)))))).........((((.((((.(((..((((......))))..))).))))..))))...------------------------- ( -18.90) >consensus CUGCGUCGCAAAAGCAUUUGAUUUAAAUUGAGUUUGCGAAAAU_UUCGUUGAUUUGAUUGAAGCAACUAAACUUGCACCAAGCGGAACCAACUAU_________________________ ......((((((..((.((......)).))..)))))).........((((.((((.(((..((((......))))..))).))))..))))............................ (-18.51 = -18.07 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:44 2006