Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,603,061 – 2,603,293 |
Length | 232 |
Max. P | 0.968154 |
Location | 2,603,061 – 2,603,177 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 93.28 |
Mean single sequence MFE | -41.18 |
Consensus MFE | -37.64 |
Energy contribution | -38.20 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.11 |
Mean z-score | -1.24 |
Structure conservation index | 0.91 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771861 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2603061 116 + 23771897 GCUUGGUUGCAUCCGCCGCCGUGGCUUUUGUUGCACUUAUCUGGCGUUGCCGUUACGCACAAGUGGCUAUGGCGAAAGGAUAUGCACUAGGCGAAAUCAAGGAUGCAUCUCGAGAG .(((((.((((((((((((....))......((((..(((((....(((((((..(((....)))...)))))))..)))))))))...)))(....)..))))))).).)))).. ( -42.50) >DroSec_CAF1 1392 108 + 1 GCUUGGCUACAUCCGCCGCCGUGGCUUUUGUUGCACUUAUCUGGCGCUGCCGUUACGCACAAGUGGCUAUGGCGCAAGGAUAUGCACUAGGCGAAAUCAAGGA--------AGGAG ((((((....((((..(((((((((((((((.((.......((((...))))....))))))).))))))))))...)))).....))))))...........--------..... ( -35.20) >DroSim_CAF1 3821 116 + 1 GCUUGGCUGCAUCCGCCGCCGUGGCUUUUGUUGCACUUAUCUGGCGCUGCCGUUACGCACAAGUGGCUAUGGCGAAAGGAUAUGCACUAGGCGAAAUCAAGGAUGCAUCUCAAGAG .(((((.((((((((((((((((((((((((.((.......((((...))))....))))))).)))))))))...((........)).)))(....)..))))))).).)))).. ( -42.30) >DroEre_CAF1 1409 116 + 1 GCUUGGCUGCAUCCGCCGCCGUGGCUUUUGUUGCACUUAUCUGGCGCUGCCGUUACGCACAAGUGGCUAUGGCGAAAGGAUGUGCACUAGGCGAAAUCUAGGAUGCAUCUCAAGAA .(((((.(((((((..(((((((((((((((.((.......((((...))))....))))))).))))))))))...((((.(((.....)))..)))).))))))).).)))).. ( -43.70) >DroYak_CAF1 4377 116 + 1 GCUUGGCUGCAUCCGCCGCCGUGGCUUUUGUUGCACUUAUCUGGCGCUGCCGUUACGCACAAGUGGCUUUGGCGAAAGGAUAUGCACUCGGCGAAAUCAAGGAUGCAUCUCAAGAA .(((((.(((((((..(((((.(((....))((((..(((((..(((((..(((((......)))))..)))))...)))))))))).))))).......))))))).).)))).. ( -42.20) >consensus GCUUGGCUGCAUCCGCCGCCGUGGCUUUUGUUGCACUUAUCUGGCGCUGCCGUUACGCACAAGUGGCUAUGGCGAAAGGAUAUGCACUAGGCGAAAUCAAGGAUGCAUCUCAAGAG .(((((.((((((((((((....))......((((..(((((..(((((..(((((......)))))..)))))...)))))))))...)))(....)..))))))).).)))).. (-37.64 = -38.20 + 0.56)
Location | 2,603,137 – 2,603,257 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.92 |
Mean single sequence MFE | -27.72 |
Consensus MFE | -13.48 |
Energy contribution | -12.88 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.33 |
Mean z-score | -1.73 |
Structure conservation index | 0.49 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541493 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2603137 120 + 23771897 AGGAUAUGCACUAGGCGAAAUCAAGGAUGCAUCUCGAGAGUAUCAAGAACGUGCUCUAAAGGUAUGCAAGCACAUUUUUUGAAUGCAAAAGUCGAAUUGAAUAUGCACUGCAUACUUUUA ..((.(((((((..(......)..)).))))).)).(((((((.......)))))))(((((((((((.(((.(((((((((.(.....).)))))..)))).)))..))))))))))). ( -29.50) >DroSec_CAF1 1468 112 + 1 AGGAUAUGCACUAGGCGAAAUCAAGGA--------AGGAGUAUCAAGAAGGUGCUCUAGAAGUGUGCAAGCACACUUUUUGAAUGCAAAAGUCUAAUUUAAUAUUCACUGCAUACUUUUA .((((((....(((((...........--------.((((((((.....))))))))(((((((((....)))))))))...........))))).....)))))).............. ( -29.20) >DroSim_CAF1 3897 119 + 1 AGGAUAUGCACUAGGCGAAAUCAAGGAUGCAUCUCAAGAGUAUCAAGAAGGUGCUCUAGAAGUGUGCAAGCACAUUUUUUGAAUGCAAAAGUCAAAUUUAAUAUUCACUGCAUACUU-UA .((((((......((((....).....(((((.(((((((((((.....))))))))(((((((((....)))))))))))))))))...))).......))))))...........-.. ( -29.12) >DroEre_CAF1 1485 95 + 1 AGGAUGUGCACUAGGCGAAAUCUAGGAUGCAUCUCAAGAAUAUAUCGAAGGUGCUCCAAGGGUAUGCAAGCACGCCUUUUGAA-------------------------UGCAAAGGUCCG .((((.((((..(((((...(((.(((.((((((...((.....))..))))))))).)))((......)).)))))......-------------------------))))...)))). ( -28.90) >DroYak_CAF1 4453 108 + 1 AGGAUAUGCACUCGGCGAAAUCAAGGAUGCAUCUCAAGAAUAUAUCGAAGGUGCUCUAAGGGUAUGCAAGCACAUUUUUUGACAGCUUA------------AAUUCACUGCAUACUUCUA ((((((((((....(((...((..(((.((((((...((.....))..)))))))))..))...)))((((.((.....))...)))).------------.......)))))).)))). ( -21.90) >consensus AGGAUAUGCACUAGGCGAAAUCAAGGAUGCAUCUCAAGAGUAUCAAGAAGGUGCUCUAAAGGUAUGCAAGCACAUUUUUUGAAUGCAAAAGUC_AAUU_AAUAUUCACUGCAUACUUCUA ....((((((..........................(((((((.......)))))))((((((.((....)).)))))).............................))))))...... (-13.48 = -12.88 + -0.60)
Location | 2,603,177 – 2,603,293 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.27 |
Mean single sequence MFE | -26.29 |
Consensus MFE | -17.17 |
Energy contribution | -18.43 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.20 |
Mean z-score | -2.18 |
Structure conservation index | 0.65 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.968154 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2603177 116 + 23771897 UAUCAAGAACGUGCUCUAAAGGUAUGCAAGCACAUUUUUUGAAUGCAAAAGUCGAAUUGAAUAUGCACUGCAUACUUUUAGACACCUGGCAUUCUUAAUA-AAUUAUUUUUGA---AUGC ..........(((.((((((((((((((.(((.(((((((((.(.....).)))))..)))).)))..)))))))))))))))))...((((((..((..-......))..))---)))) ( -32.70) >DroSec_CAF1 1500 119 + 1 UAUCAAGAAGGUGCUCUAGAAGUGUGCAAGCACACUUUUUGAAUGCAAAAGUCUAAUUUAAUAUUCACUGCAUACUUUUAGACACCUUGCAUUUUUAAUA-AAUAAUUUAGCAGCUAUGA .......((((((.((((((((((((((((....)))..((((((..(((......)))..))))))..)))))))))))))))))))............-................... ( -28.60) >DroSim_CAF1 3937 115 + 1 UAUCAAGAAGGUGCUCUAGAAGUGUGCAAGCACAUUUUUUGAAUGCAAAAGUCAAAUUUAAUAUUCACUGCAUACUU-UAGA---CUUGCAUUUUUAACA-AAUAAUUUGGCAGCUAUGA ........((.((((..(((((((((....))))))))).(((((((..((((........................-..))---)))))))))......-........)))).)).... ( -21.77) >DroYak_CAF1 4493 108 + 1 UAUAUCGAAGGUGCUCUAAGGGUAUGCAAGCACAUUUUUUGACAGCUUA------------AAUUCACUGCAUACUUCUAAACACCUUGCAGUUUAAAUGAAAUAGUUUGGCAGUGAAGA .......(((.((.((.((((((.((....)).)))))).)))).))).------------..((((((((..((((((((((........)))))...))...)))...)))))))).. ( -22.10) >consensus UAUCAAGAAGGUGCUCUAAAAGUAUGCAAGCACAUUUUUUGAAUGCAAAAGUC_AAUUUAAUAUUCACUGCAUACUUUUAGACACCUUGCAUUUUUAAUA_AAUAAUUUGGCAGCUAUGA .......((((((.((((((((((((((........................................))))))))))))))))))))................................ (-17.17 = -18.43 + 1.25)
Location | 2,603,177 – 2,603,293 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.27 |
Mean single sequence MFE | -25.57 |
Consensus MFE | -14.39 |
Energy contribution | -17.64 |
Covariance contribution | 3.25 |
Combinations/Pair | 1.08 |
Mean z-score | -2.14 |
Structure conservation index | 0.56 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845283 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2603177 116 - 23771897 GCAU---UCAAAAAUAAUU-UAUUAAGAAUGCCAGGUGUCUAAAAGUAUGCAGUGCAUAUUCAAUUCGACUUUUGCAUUCAAAAAAUGUGCUUGCAUACCUUUAGAGCACGUUCUUGAUA ....---............-(((((((((((....((.((((((.((((((((.(((((((.........(((((....)))))))))))))))))))).)))))))).))))))))))) ( -32.00) >DroSec_CAF1 1500 119 - 1 UCAUAGCUGCUAAAUUAUU-UAUUAAAAAUGCAAGGUGUCUAAAAGUAUGCAGUGAAUAUUAAAUUAGACUUUUGCAUUCAAAAAGUGUGCUUGCACACUUCUAGAGCACCUUCUUGAUA (((.((.((((........-.......(((((((((.((((((.(((((.......)))))...)))))))))))))))....(((((((....)))))))....)))).))...))).. ( -29.30) >DroSim_CAF1 3937 115 - 1 UCAUAGCUGCCAAAUUAUU-UGUUAAAAAUGCAAG---UCUA-AAGUAUGCAGUGAAUAUUAAAUUUGACUUUUGCAUUCAAAAAAUGUGCUUGCACACUUCUAGAGCACCUUCUUGAUA (((.((.(((.......((-(((.......)))))---((((-((((.((((((.((........)).))....((((.........)))).)))).)))).))))))).))...))).. ( -19.50) >DroYak_CAF1 4493 108 - 1 UCUUCACUGCCAAACUAUUUCAUUUAAACUGCAAGGUGUUUAGAAGUAUGCAGUGAAUU------------UAAGCUGUCAAAAAAUGUGCUUGCAUACCCUUAGAGCACCUUCGAUAUA ..((((((((.....((((((...(((((........))))))))))).))))))))..------------.....((((.......((((((...........))))))....)))).. ( -21.50) >consensus UCAUAGCUGCCAAAUUAUU_UAUUAAAAAUGCAAGGUGUCUAAAAGUAUGCAGUGAAUAUUAAAUU_GACUUUUGCAUUCAAAAAAUGUGCUUGCACACCUCUAGAGCACCUUCUUGAUA ................................(((((((((((((((((((((.....................((((.........))))))))))))))))))).))))))....... (-14.39 = -17.64 + 3.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:57 2006