Locus 8589

Sequence ID 3L_DroMel_CAF1
Location 22,374,368 – 22,374,458
Length 90
Max. P 0.634110
window14071

overview

Window 1

Location 22,374,368 – 22,374,458
Length 90
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 79.44
Mean single sequence MFE -34.20
Consensus MFE -24.90
Energy contribution -25.52
Covariance contribution 0.61
Combinations/Pair 1.22
Mean z-score -1.18
Structure conservation index 0.73
SVM decision value 0.21
SVM RNA-class probability 0.634110
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22374368 90 + 23771897
CCACUCGCCGGCUCGUUUAGUUCGGUGGAUA----------GGUGGAGCAUGUGGGUGCCAGAUUGCCCACGAGCUGCAUCCCAGCUCCUUCCUC-------UUGAA
....(((((((((.....)).))))))).((----------((.((((...((((((........))))))((((((.....)))))).)))).)-------))).. ( -33.10)
>DroSec_CAF1 25474 90 + 1
CCACUCGCCGGCUCGUUUAGUUCGGUGGAUA----------GGUGGAGCAUGUGGGUGCCAGAUUGCCCACGAGCUGCAUCCCAGCUCCUUCCCC-------UUGAA
....(((((((((.....)).)))))))..(----------((.((((...((((((........))))))((((((.....)))))).))))))-------).... ( -33.20)
>DroSim_CAF1 39928 90 + 1
CCACUCGCUGGAUCGUUUAGUUCGGUGGAUA----------GGUGGAGCAUGUGGGUGCCAGAUUGCCCACGAGCUGCAUCCCAGCUCCUUCCCC-------UUGAA
(((((.((((((...))))))..)))))..(----------((.((((...((((((........))))))((((((.....)))))).))))))-------).... ( -33.60)
>DroEre_CAF1 42094 78 + 1
CCACUCGCCGGCUCGUUUAGCUCGGCGGAUA----------GGUGGAGCAUGUGGGUGCCAGAUUGCCCACGAGCUGCAU------------GCC-------UUCAA
.....((((((((.....))).)))))((.(----------((((.(((.(((((((........))))))).))).)..------------)))-------))).. ( -33.40)
>DroYak_CAF1 33853 90 + 1
CCACUCGCCGACUCGUUAAGUUUGGCGGAUA----------GGUGGACCAUGUGGGUGCCAGAUUGCCCACGAGCUGCAUCUCAUCUCCUUCGCC-------UUGAA
....(((((((((.....)).)))))))..(----------((((((....((((((........))))))(((......)))......))))))-------).... ( -28.00)
>DroPer_CAF1 80099 99 + 1
CCACUCGCCGAGUCGUUUAGUUCGGCGGCGUGGCGGCGCAGGGCGGAGCAUGUGGGUGCCAGAUUGCCCACGAGCAG--------CUCCUUGGGCACCGAAACCGAA
((((((((((((.(.....))))))))).))))(((.((..((.(((((.(((((((........)))))))....)--------))))))..)).)))........ ( -43.90)
>consensus
CCACUCGCCGGCUCGUUUAGUUCGGCGGAUA__________GGUGGAGCAUGUGGGUGCCAGAUUGCCCACGAGCUGCAUCCCAGCUCCUUCCCC_______UUGAA
....(((((((((.....))).)))))).............((((.(((.(((((((........))))))).))).)))).......................... (-24.90 = -25.52 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:43 2006