Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 22,368,832 – 22,368,952 |
Length | 120 |
Max. P | 0.913950 |
Location | 22,368,832 – 22,368,952 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.77 |
Mean single sequence MFE | -29.75 |
Consensus MFE | -24.08 |
Energy contribution | -24.38 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.07 |
Mean z-score | -2.91 |
Structure conservation index | 0.81 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913950 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22368832 120 - 23771897 AUGACUAUUCCCGAUUUUCCGGGAAAAGCAGGCAGCUCCGCACGCAUUAUGUAUGCCAUGCUCCUGCAUCGAUAAAUCAGUCAAAACUGUCAAAUGCAUAUAAAUUAUAUGCAAAAGCUC .(((((.((((((......))))))..(((((.(((...(((..(.....)..)))...))))))))...........)))))...........((((((((...))))))))....... ( -39.70) >DroPse_CAF1 70460 118 - 1 AUGACUAUUCCCGAUUUUCCUGGAAAAGCUGGCAGCAC--CACGCAUUAUGUAUGCCAUGCUUCUGCAUCGAUAAAUCAGUCAAAACUGUCAAAUGCAUAUAAAUUAUAUGCAAAAGCCC .((((.......(((((((.((.(.((((((((((((.--.........))).))))).)))).).))..)).)))))(((....)))))))..((((((((...))))))))....... ( -26.20) >DroSim_CAF1 34329 120 - 1 AUGACUAUUCCCGAUUUUCCAGGAAAAGCUGGCAGCUCCGCACGCAUUAUGUAUGCCAUGCUCCUGCAUCGAUAAAUCAGUCAAAACUGUCAAAUGCAUAUAAAUUAUAUGCAAAAGCUC .(((((.((((.(......).))))..((.((.(((...(((..(.....)..)))...))))).))...........)))))...........((((((((...))))))))....... ( -29.00) >DroEre_CAF1 37050 120 - 1 AUGACUAUUCCCGAUUUUCCAGGAAAAGCAGGCAACUCCGCACGCAUUAUGUAUGCCAUGCUCCUGCAUCGAUAAAUCAGUCAAAACUGUCAAAUGCAUAUAAAUUAUAUGCAAAAGCUC .((((((((..((((....(((((...(.((....)).)(((.((((.....))))..)))))))).))))...))).)))))...........((((((((...))))))))....... ( -28.30) >DroYak_CAF1 28511 120 - 1 AUGACUAUUCCCGAUUUUCCAGGAAAAGCAGGCGACUCUGCACGCAUUAUGUAUGCCAUGCUCCUGCAUCGAUAAAUCAGUCAAAACUGUCAAAUGCAUAUAAAUUAUAUGCAAAAGCUC .(((((.((((.(......).))))..(((((.(.(...(((..(.....)..)))...)).)))))...........)))))...........((((((((...))))))))....... ( -29.10) >DroPer_CAF1 73294 118 - 1 AUGACUAUUCCCGAUUUUCCUGGAAAAGCUGGCAGCAC--CACGCAUUAUGUAUGCCAUGCUUCUGCAUCGAUAAAUCAGUCAAAACUGUCAAAUGCAUAUAAAUUAUAUGCAAAAGCCC .((((.......(((((((.((.(.((((((((((((.--.........))).))))).)))).).))..)).)))))(((....)))))))..((((((((...))))))))....... ( -26.20) >consensus AUGACUAUUCCCGAUUUUCCAGGAAAAGCAGGCAGCUCCGCACGCAUUAUGUAUGCCAUGCUCCUGCAUCGAUAAAUCAGUCAAAACUGUCAAAUGCAUAUAAAUUAUAUGCAAAAGCUC .(((((.((((.(......).))))..((.((.(((...(((..(.....)..)))...))))).))...........)))))...........((((((((...))))))))....... (-24.08 = -24.38 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:36 2006