Locus 8584

Sequence ID 3L_DroMel_CAF1
Location 22,366,967 – 22,367,057
Length 90
Max. P 0.681554
window14063

overview

Window 3

Location 22,366,967 – 22,367,057
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -25.94
Consensus MFE -21.42
Energy contribution -22.50
Covariance contribution 1.08
Combinations/Pair 1.09
Mean z-score -1.43
Structure conservation index 0.83
SVM decision value 0.31
SVM RNA-class probability 0.681554
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22366967 90 - 23771897
GUGACUCUGCCUCGUCACCAUCAUCCAUCCGCCGCCGCAUCGUCAUCUUCAUCAUCGGCUCCAUUGUGAUCGGCGCACGAGGCGGACUUU
.....(((((((((((.(((((((......((((.....................))))......))))).)).).)))))))))).... ( -28.30)
>DroSec_CAF1 18128 90 - 1
GUGACUCUGCCUCGUCACCAUCAUCCAUCCGCCGCCACAUCGUCAUCUUCAUCAUCGGCUCCAUUGUGAUCGGCACACGAGGCGGACUGU
.....((((((((((..(((((((......((((.....................))))......))))).))...)))))))))).... ( -26.30)
>DroSim_CAF1 32432 90 - 1
GUGACUCUGCCUCGUCACCAUCAUCCAUCCGCCGCCACAUCGUCAUCUUCAUCAUCGGCUCCAUUGUGAUCGGCGCACGAGGCGGACUGU
.....(((((((((((.(((((((......((((.....................))))......))))).)).).)))))))))).... ( -28.30)
>DroEre_CAF1 35221 88 - 1
GUGACUCUGCC-CGGCACCAUCGUUCAUCCGCCGCCACAUCGUCAUCUUCAUCAU-CGCUCCAUUGUGAUCGGCGCACGAGGCGGACCGC
(((..((((((-((((.((...........(.((......)).).........((-(((......))))).)).)).)).)))))).))) ( -22.40)
>DroYak_CAF1 16138 90 - 1
GCGACUCCGCCUCGUCACCAUCAUUCAUCCACCGCCACAUCGUCAUCUUCAUCAUCCGCUCCAUUGUGAUCGGCGCACGAGGCGGACUGU
.....(((((((((((.(((((((.........................................))))).)).).)))))))))).... ( -24.38)
>consensus
GUGACUCUGCCUCGUCACCAUCAUCCAUCCGCCGCCACAUCGUCAUCUUCAUCAUCGGCUCCAUUGUGAUCGGCGCACGAGGCGGACUGU
.....(((((((((((.(((((((......((((.....................))))......))))).)).).)))))))))).... (-21.42 = -22.50 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:35 2006