Locus 8582

Sequence ID 3L_DroMel_CAF1
Location 22,365,448 – 22,365,558
Length 110
Max. P 0.822908
window14060

overview

Window 0

Location 22,365,448 – 22,365,558
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.18
Mean single sequence MFE -41.95
Consensus MFE -26.46
Energy contribution -27.18
Covariance contribution 0.72
Combinations/Pair 1.19
Mean z-score -2.27
Structure conservation index 0.63
SVM decision value 0.69
SVM RNA-class probability 0.822908
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22365448 110 + 23771897
AACAUGUGUGCAGGAUGCAGGA-------CGAAGGCGAAACC---GGCCGGGAUGCCUUGGAGAGUUUGUGCUCGUCGUCUGGCCUGCGUUUCAAUUGCGGCCAGGAUAUGCAUAAGUGU
.((((.((((((........((-------(((..(((((..(---..(((((....))))).)..)))))..))))).(((((((.(((.......))))))))))...)))))).)))) ( -42.00)
>DroSec_CAF1 16623 110 + 1
AACAUGUGUGCAGGAUGCAGGA-------CGAAGGCGAUGCC---GGCUGGGAUGCCUGGGAGAGUUUGUGCUCGUCGUCUGGCCUGCGUUUCAAUUGCGGCCAGGAUAUGCAUAAGUGU
.((((.((((((.((((.((.(-------(((..((..(.((---(((......))).)).)..)))))).)))))).(((((((.(((.......))))))))))...)))))).)))) ( -43.20)
>DroSim_CAF1 30971 110 + 1
AACAUGUGUGCAGGAUGCAGGA-------CGAAGGCGAUGCU---UGCCGGGAUGCCUGGGAGAGUUUGUGCUCGUCGUCUGGCCUGCGUUUCAAUUGCGGCCAGGAUAUGCAUAAGUGU
.((((.((((((........((-------(((..((((.(((---(.(((((...)))))..))))))))..))))).(((((((.(((.......))))))))))...)))))).)))) ( -44.40)
>DroEre_CAF1 33780 117 + 1
AACAUGUGUGCAUGCUGCAGGACGAAGGACGAAGAGGAACCC---GGCCUGGAUUCCUGGGAGAGUUUGUGUUCGUCGUCUGGCCUGCGUUUCAAUUGCGGCCAGGAUAUGCAUAAGUGU
.((((.((((((((.............((((((.(.((((.(---..((..(....)..)).).)))).).)))))).(((((((.(((.......)))))))))).)))))))).)))) ( -46.30)
>DroYak_CAF1 14604 109 + 1
AACAUGUGUGCAUGAUGCGGGA-------CGAAGAGGAAACC---GGCC-GGAUUCCUGGCAGAGUUUGUAUUCGUCAUCUGGCCUGCACUUCAAUUGCGGCCAGGAUAUGCAUAAGUGU
.((((.((((((((......((-------((((..(.(((((---.(((-((....))))).).)))).).)))))).(((((((.(((.......)))))))))).)))))))).)))) ( -45.70)
>DroPer_CAF1 68987 92 + 1
AACAUGUGUGCAAGACGCAGGA-----------GGCGACGCACAAGGAGGGGAUGUCU-----------------UGGUCUGGCCGGCAUUUCAAUUGCGGCCAGGAUAUGCAUAAGUGC
..(((.((((((...(((....-----------.))).....(((((........)))-----------------)).((((((((.((.......))))))))))...)))))).))). ( -30.10)
>consensus
AACAUGUGUGCAGGAUGCAGGA_______CGAAGGCGAAGCC___GGCCGGGAUGCCUGGGAGAGUUUGUGCUCGUCGUCUGGCCUGCGUUUCAAUUGCGGCCAGGAUAUGCAUAAGUGU
.((((.((((((.....................(((((.........(((((...)))))..((((....)))).)))))(((((.(((.......)))))))).....)))))).)))) (-26.46 = -27.18 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:33 2006