Locus 8581

Sequence ID 3L_DroMel_CAF1
Location 22,365,216 – 22,365,328
Length 112
Max. P 0.561008
window14059

overview

Window 9

Location 22,365,216 – 22,365,328
Length 112
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 86.59
Mean single sequence MFE -28.72
Consensus MFE -21.28
Energy contribution -20.96
Covariance contribution -0.32
Combinations/Pair 1.16
Mean z-score -1.59
Structure conservation index 0.74
SVM decision value 0.05
SVM RNA-class probability 0.561008
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22365216 112 + 23771897
UAAGGUC-CAAAAUUUAGUUUACCUUCCACAUUAAUAAUUUUGCACGUGAUGGGUCCACUGUGCAAAUGGUGAGCCGCAGGAGCACAGAUCAAAAAUUGCAUGCGGGACUCAA
...((((-(........(((((((...............((((((((((.......))).))))))).)))))))((((...(((............))).)))))))))... ( -29.89)
>DroSec_CAF1 16378 112 + 1
UAAGGUC-AAAAAUUUAAUUUAACUCCCACAUUAUUAAUUUUGCACGUGAUGGGUCCACUGUGCAAAUGGUGAGCCGCAGGAGCACGGACCAAAAAUUGCAUGCGGGACUCAA
.......-................((((.(((...(((((((...((((.((((..((((((....))))))..)).))....)))).....))))))).))).))))..... ( -27.60)
>DroSim_CAF1 30724 113 + 1
UAAGGUCCAAAAAUUAAAUUUAACUCCCACAUUAUUAAUUUUGCACGUGAUGGGUCCACUGUGCAAAUGGUGAGCCGCAGGAGCACGGACCAAAAAUUGCAUGCGGGACUCAA
...(((((.((((((((.................))))))))(((.(..((.(((((...((((...(((....))).....)))))))))....))..).))).)))))... ( -29.93)
>DroEre_CAF1 33531 109 + 1
UAAAGGCACAAAAUGUCAUUUAACCACCAC---AAUAAUUUUGCAUGUGAUGAGUCCACUGUGCAGAUGCCGAGCCGCAGGAGCACGGACCAA-AAUUGCAUGCGGGACUCAA
....((((.....)))).............---.....(((((((((..((..((((...((((...(((......)))...))))))))...-.))..)))))))))..... ( -29.40)
>DroYak_CAF1 14345 110 + 1
UAAAUGCAAAAAAUUUAAUUUAACUGCCAU---AAUAAUUUAGCAUGAGAUGAGUCCACUGUGCAAUUGGUGACUCGCAGGAGCACGAACCAAAAAUUGCAUGCGGGACUCAA
...((((...(((((...............---...))))).))))....(((((((...((((((((..((..(((........)))..))..))))))))...))))))). ( -26.77)
>consensus
UAAGGUC_AAAAAUUUAAUUUAACUCCCACAUUAAUAAUUUUGCACGUGAUGGGUCCACUGUGCAAAUGGUGAGCCGCAGGAGCACGGACCAAAAAUUGCAUGCGGGACUCAA
..................................................(((((((...((((((.(..((..(((........)))..))..).))))))...))))))). (-21.28 = -20.96 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:32 2006