Locus 8580

Sequence ID 3L_DroMel_CAF1
Location 22,364,453 – 22,364,553
Length 100
Max. P 0.877262
window14058

overview

Window 8

Location 22,364,453 – 22,364,553
Length 100
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 76.34
Mean single sequence MFE -28.05
Consensus MFE -13.27
Energy contribution -14.13
Covariance contribution 0.86
Combinations/Pair 1.25
Mean z-score -2.22
Structure conservation index 0.47
SVM decision value 0.90
SVM RNA-class probability 0.877262
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22364453 100 - 23771897
UAA-UCGAUUUCCCCGUUUUUCAA-----------CUCCCACCCACAAA-UGGAGCACAUAAUGCUUCUUAG---GAGUUUUUAGAAACGGGUUAUUCCAUUUGCCAGCUGCACCG---
...-..((.(..(((((((((.((-----------((((...(((....-)))((((.....)))).....)---)))))...)))))))))..).))....(((.....)))...--- ( -24.70)
>DroSec_CAF1 15628 103 - 1
UAA-UCGAUUUCCCCGUUUUCCGA-----------CUCCCACCCACUAA-UGGAGCAUUGAAUGCAUUUUAG---GAGUUUUUGGAAACGGGUAAAUCCAUUUGCCAGCUGCAUCGCAA
...-..(((((.(((((((((.((-----------((((...(((....-))).((((...))))......)---)))))...))))))))).))))).........((......)).. ( -30.30)
>DroSim_CAF1 29627 103 - 1
UAA-UCGAUUUCCCCGUUUUCCGA-----------CUCCCACCCACUAA-UGGAGCUCUGAAUGCAUCUUAG---GAGUUUUUGGAAACGGGUAAAUCCAUUUGCCAGCUGCAUCGCAA
...-..(((((.(((((((((.((-----------((((...(((....-))).((.......))......)---)))))...))))))))).))))).........((......)).. ( -29.40)
>DroEre_CAF1 32804 99 - 1
UAA-UCGAUUUCCCCGUUUUCCGA-----------CUCCCACCCACUGA-UGGAGCACUGAAUGCA-CUUAU---GAGUUUUUGGAAACGGGAAAAUCCAUUUGCCAGCUGCAUCC---
...-..(((((.(((((((((.((-----------(((....(((....-))).(((.....))).-.....---)))))...))))))))).)))))....(((.....)))...--- ( -26.10)
>DroYak_CAF1 13613 99 - 1
UAA-UUGAUUUCCCCGUUUUCUGA-----------AUCCCACCCACUAA-UGCAGCACUGAAUGCU-CUUAG---GAGAUUUUGGAAACUGGUAAACCCAUUUGCCAGCUGCAUCC---
...-....................-----------.............(-((((((.(..((..((-(....---)))..))..)....(((((((....))))))))))))))..--- ( -22.20)
>DroPer_CAF1 67970 116 - 1
GAAAGGGGUUCCCCCGAUUUCCAUCAUCCACCAUCCUACCACCCACCAAUUGGCGUAUCGAAUGCAUUACGGGGGGAUACUUUGGAUAUUGGAAAAUUCAGCUGGCAGCUGCCACA---
(((.((((...))))..((((((..(((((..((((..((...((.....))((((.....)))).....))..))))....)))))..)))))).))).(.((((....))))).--- ( -35.60)
>consensus
UAA_UCGAUUUCCCCGUUUUCCGA___________CUCCCACCCACUAA_UGGAGCACUGAAUGCAUCUUAG___GAGUUUUUGGAAACGGGUAAAUCCAUUUGCCAGCUGCAUCG___
......(((((.(((((((((.....................(((.....))).(((.....)))..................))))))))).)))))..................... (-13.27 = -14.13 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:31 2006