Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,602,670 – 2,602,789 |
Length | 119 |
Max. P | 0.667911 |
Location | 2,602,670 – 2,602,789 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.72 |
Mean single sequence MFE | -31.84 |
Consensus MFE | -28.90 |
Energy contribution | -28.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -1.19 |
Structure conservation index | 0.91 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667911 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2602670 119 + 23771897 CUUGAGAGCCGCAGUUUACGGCUUAGUGGAUUUCACCUGUACCGAA-AAGUCCAAAAGUUGAGCCAGUCAACCGGAUUGCGAAAAGUAAACUGCAAAGCAAUUAACAUUGUUUCCCCGAA ..........(((((((((((((((((((((((.............-)))))))....)))))))((((.....)))).......))))))))).(((((((....)))))))....... ( -30.82) >DroSec_CAF1 1006 119 + 1 CUUGAGAGCCGCAGUUUACGGCUUAGCGGAUUUCACCUGUACCGAA-AAGUCCAUCAGUUGAGUCAGUCAACCGGAUUGCGCAAAGUAAACUGCAAAGCAAUUAACAUUGUUUCCCCGAA ..........((((((((((((((..(((((.......)).)))..-)))))......(((.(.(((((.....)))))).))).))))))))).(((((((....)))))))....... ( -30.40) >DroSim_CAF1 3435 119 + 1 CUUGAGAGCCGCAGUUUACGGCUUAGCGGAUUUCACCUGUACCGAA-AAGUCCAACAGUUGAGUCAGUCAACCGGAUUGCGCAAAGUAAACUGCAAAGCAAUUAACAUUGUUUCCCCGAA ..........((((((((((((((..(((((.......)).)))..-)))))......(((.(.(((((.....)))))).))).))))))))).(((((((....)))))))....... ( -30.40) >DroEre_CAF1 1034 119 + 1 CUUGAGAGCCGCAGUUUACGGCUUAGCGGAUGUCGCCCGUACCGAC-AAGUCCAACAGUUGAGUCAGUCAACCGGAUUGCGCAAAGUAAACUGCAAAGCAAUUAACAUUGUUUUCCCCAA ..........(((((((((((((((((((((((((.......))))-)..)))....))))))))((((.....)))).......)))))))))((((((((....))))))))...... ( -34.20) >DroYak_CAF1 3997 120 + 1 CUUGAGAGCCGCAGUUUACGGCUUAGCGGAUGUCACCUGUACCAAGAAAGUCCAACAGUUGAGCCAGUCAACCGGAUUGCGCAAAGUAAACUGCAAAGCAAUUAACAUUGUUUUCCCCAA ..........(((((((((((((((((((((.....((......))...))))....))))))))((((.....)))).......)))))))))((((((((....))))))))...... ( -33.40) >consensus CUUGAGAGCCGCAGUUUACGGCUUAGCGGAUUUCACCUGUACCGAA_AAGUCCAACAGUUGAGUCAGUCAACCGGAUUGCGCAAAGUAAACUGCAAAGCAAUUAACAUUGUUUCCCCGAA ..........(((((((((((((((((((((((..............))))))....))))))))((((.....)))).......))))))))).(((((((....)))))))....... (-28.90 = -28.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:54 2006