| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,363,037 – 22,363,139 |
| Length | 102 |
| Max. P | 0.999964 |
| Location | 22,363,037 – 22,363,139 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 93.55 |
| Mean single sequence MFE | -29.16 |
| Consensus MFE | -27.33 |
| Energy contribution | -27.73 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.94 |
| SVM decision value | 4.95 |
| SVM RNA-class probability | 0.999964 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22363037 102 - 23771897 -UUUAAUGCACUUUUUCAAUCCUCUUGCAAAAAACAAAGCCCACAGGGACAAACAAAGUUGGUGGGGGCAG-------AAGGUGAGGAGCAGGGGUAAGUGUAAUAAAUU -((((.((((((((..(..((((((((.......))).((((.((..(((.......)))..)).))))..-------.....)))))...)..).))))))).)))).. ( -28.10) >DroSec_CAF1 14221 102 - 1 -UUUAAUGCACUUUUUCAAUCCUCUUGCAAAAAACAAAGUCCACAGGGACAAACAAAGUUGCUGGGGGCAG-------AAGGUGAGGAGCAGGGGUAAGUGUAAUAAAUU -((((.((((((((..(..((((((((.......))).((((.(((.(((.......))).))).))))..-------.....)))))...)..).))))))).)))).. ( -29.90) >DroSim_CAF1 28201 102 - 1 -UUUAAUGCACUUUUUCAAUCCUCUUGCAAAAAACAAAGCCCACAGGGACAAACAAAGUUGCUGGGGGCAG-------AAGGUGAGGAGCAGGGGUAAGUGUAAUAAAUU -((((.((((((((..(..((((((((.......))).((((.(((.(((.......))).))).))))..-------.....)))))...)..).))))))).)))).. ( -32.60) >DroEre_CAF1 30955 103 - 1 UUUUAAUGCACUUUUUCAAUCCCCUUGCAAAAAACAAAAUCCACAGGGACAAACAAAGUUGCUGGGGGCAG-------AAGGUGAGGAGCAGGGGUAAGUGUAAUAAAUU .((((.(((((((........(((((((.....((....(((.(((.(((.......))).))))))....-------...)).....))))))).))))))).)))).. ( -28.00) >DroYak_CAF1 12202 110 - 1 UUUUAAUGCACUUUUUCAAUCCUCUUGCAAAAAACAAAAGCCACAGGGACAAACAAAGUUGCUGCGGGUAAAGGGGGAAAGGUGAGGAGCAGGGGUAAGUGUAAUAAAUU .((((.((((((((..(..(((((..............(.((.(((.(((.......))).))).)).)..............)))))...)..).))))))).)))).. ( -27.19) >consensus _UUUAAUGCACUUUUUCAAUCCUCUUGCAAAAAACAAAGCCCACAGGGACAAACAAAGUUGCUGGGGGCAG_______AAGGUGAGGAGCAGGGGUAAGUGUAAUAAAUU .((((.((((((((..(..(((((..............((((.(((.(((.......))).))).))))..............)))))...)..).))))))).)))).. (-27.33 = -27.73 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:30 2006