Locus 8578

Sequence ID 3L_DroMel_CAF1
Location 22,361,486 – 22,361,581
Length 95
Max. P 0.980730
window14056

overview

Window 6

Location 22,361,486 – 22,361,581
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 95.79
Mean single sequence MFE -25.32
Consensus MFE -22.32
Energy contribution -22.40
Covariance contribution 0.08
Combinations/Pair 1.09
Mean z-score -1.84
Structure conservation index 0.88
SVM decision value 1.87
SVM RNA-class probability 0.980730
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22361486 95 - 23771897
AUUUCCGGUCCUCUUCUGGCCCGGUCCGGAGCCGGCGUCCUUCAGACAUUUUAAUGAUUUUCCGAGUGAGAAUUCUUAUUCAUUUGUGUUCCUGC
....((((.((......)).))))...((((((((.(((.....)))................(((((((....)))))))..))).)))))... ( -25.80)
>DroSec_CAF1 12745 95 - 1
AUUUCCGGUCCUCUUCUGGCCCGGUCCGGAGCCGGCGUCCUUCAGACAUUUUAAUGAUUUUCCGAGUGAGAAUUCUUAUUCAUUUGUGUUCCUGC
....((((.((......)).))))...((((((((.(((.....)))................(((((((....)))))))..))).)))))... ( -25.80)
>DroSim_CAF1 26013 95 - 1
AUUUCCGGUCCUCUUCUGGCCCGGUCCGGAGCCGGCGUCCUUCAGACAUUUUAAUGAUUUUCCGAGUGAGAAUUCUUAUUCAUUUGUGUUCCUGC
....((((.((......)).))))...((((((((.(((.....)))................(((((((....)))))))..))).)))))... ( -25.80)
>DroEre_CAF1 29446 95 - 1
AUUUCCGGUCCUCUUUUGGCCCGGUCCGGAGGCGGCGUCCUUCAGACAUUUUAAUGAUUUUCCGAGUGAGAAUUCUCAUUCAUUUCUGUUCCUGC
....((((.((......)).))))..(((..((((.(((.....)))................(((((((....)))))))....))))..))). ( -27.80)
>DroYak_CAF1 10474 95 - 1
AUUUCCGGUCCUCUCUUAGCCCGGUCCGGAGCCGGCUUCCUUCAGACAUUUUAAUGAUUUUCCGAAUGAGAAUCCUUAUUCAUUUCUGUUCCUGC
...(((((.((...........)).)))))((.((.......(((((((....))).......(((((((....)))))))...))))..)).)) ( -21.40)
>consensus
AUUUCCGGUCCUCUUCUGGCCCGGUCCGGAGCCGGCGUCCUUCAGACAUUUUAAUGAUUUUCCGAGUGAGAAUUCUUAUUCAUUUGUGUUCCUGC
....((((.((......)).))))...(((((.((......(((..........)))....))(((((((....)))))))......)))))... (-22.32 = -22.40 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:29 2006