Locus 8577

Sequence ID 3L_DroMel_CAF1
Location 22,359,942 – 22,360,055
Length 113
Max. P 0.521675
window14055

overview

Window 5

Location 22,359,942 – 22,360,055
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.99
Mean single sequence MFE -35.46
Consensus MFE -11.04
Energy contribution -11.93
Covariance contribution 0.89
Combinations/Pair 1.27
Mean z-score -2.15
Structure conservation index 0.31
SVM decision value -0.02
SVM RNA-class probability 0.521675
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22359942 113 - 23771897
CCGUU--GGUUCCUGCUGCUCUUUGGCGACACAUGUUGCACUGACGAGCGGCAGUUGAAUGUGAAGAUUCAC--AAACACAACUACGAUUCUUUAAGAGAUUCCACGUU---GAAAGGUA
(((((--.(((((((((((((((..(((((....)))))...)).)))))))))..))))((((....))))--.))).((((...((.((((...)))).))...)))---)...)).. ( -35.30)
>DroPse_CAF1 60663 120 - 1
CUUUUUGUGUAUCUCCCACUGUUUGCCGACGAAUGUUGCAUUGUUGGGCGGCAGUUGAAGCCGAUGAUUGCCGCCAGCGCCAUUCGAAAACUUUAAGAAUCUUUGAGGUGCCAAAAGGUG
(((((((.(((((((...(.(....).).((((((.(((.......((((((((((.........)))))))))).))).))))))..................)))))))))))))).. ( -38.00)
>DroSec_CAF1 11079 113 - 1
CCGUU--UGUUCCUGCUGCUCUUUGGCGACACAUGUUGCACUGACGAGCGGCAGUUGAAUGUGGAGAUUCCC--AAGCACAACUACGAUUCUUUAAGAGUUUCCACGUU---GAAAGGUA
((...--.....(((((((((((..(((((....)))))...)).)))))))))((.(((((((((((((..--(((..(......)...)))...)))))))))))))---.)).)).. ( -39.60)
>DroSim_CAF1 24457 113 - 1
CCGUU--UGUUCCUGCUGCUCUUUGGCGACACAUGUUGCACUGACGAGCGGCAGUUAAAUGGGGAGAUUCCC--AAGCACAACUACGAUUCUUAAAGAGUUUCCACGUU---GAAAGGUA
(((((--((...(((((((((((..(((((....)))))...)).))))))))).)))))))((((((((..--(((..(......)...)))...)))))))).....---........ ( -36.90)
>DroEre_CAF1 27689 100 - 1
CCUCU--GGUUCCUACUGCUCUUUGGCGACACAUGUUGCAUUGAAGAGCCCCAGUUGAAUGCG--------------AACAACCCUGAUCCUUCAAGAGUUUUCACCUU---A-AAGGUA
.((((--.((((.....(((((((.(((((....)))))...)))))))....((.....)))--------------))).....(((....))))))).....(((..---.-..))). ( -24.40)
>DroYak_CAF1 8998 113 - 1
CCUUU--UGUCCCUACUGCUCUUUGGCGACACAUGUUGCAUUGGAGAGUCAGAGUUGAAUGUGAGGAUUCCC--GAAAACAACUCUGAUUCUUUAAGAGUUUCCACAUG---AAAAGGUA
(((((--(.........((((....(((((....))))).(((((((((((((((((....(..((....))--..)..))))))))))))))))))))).........---)))))).. ( -38.57)
>consensus
CCGUU__UGUUCCUGCUGCUCUUUGGCGACACAUGUUGCACUGACGAGCGGCAGUUGAAUGUGAAGAUUCCC__AAGCACAACUACGAUUCUUUAAGAGUUUCCACGUU___AAAAGGUA
............((.((((((((..(((((....)))))...)).)))))).)).................................................................. (-11.04 = -11.93 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:28 2006