| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 22,356,959 – 22,357,064 |
| Length | 105 |
| Max. P | 0.643070 |
| Location | 22,356,959 – 22,357,064 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.56 |
| Mean single sequence MFE | -23.57 |
| Consensus MFE | -21.32 |
| Energy contribution | -21.32 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.643070 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 22356959 105 + 23771897 GAUC-AAGAAAAAUGACUUUUGUGGGUUUUUGUAAUUUUCAUUGCACGCGUAAUUGAAAAUUUUCAAAUUCCUGCUUGCAUUUUUCGCCGCUCGCU--------------CGCCAUUUCU ....-..((((((((.(....(..((..((((.((((((((((((....)))).))))))))..))))..))..)..)))))))))...((.....--------------.))....... ( -26.00) >DroPse_CAF1 56142 118 + 1 GAUCGAAGAAAAAUGACUUUUGUGGGUUUUCGUAAUUUUCAUUGCACGCGUAAUUGAAAAUUUUCAAAUUCCUGCUUGCAUUUUUCUCUACUUGCCGCCCUUGGCCCAUCCCCCG-UCC- ((.((.(((((((((.(....(..((..((.(.((((((((((((....)))).))))))))..).))..))..)..))))))))))......((((....))))........))-)).- ( -25.80) >DroSec_CAF1 8033 104 + 1 GAUC-AAGAAAAAUGACUUUUGUGGGUUUUCGUAAUUUUCAUUGCACGCGUAAUUGAAAAUUUUCAAAUUCCUGCUUGCAUUUUUCGCCGCUCGCU--------------CGCCGUUUC- ....-..((((((((.(....(..((..((.(.((((((((((((....)))).))))))))..).))..))..)..)))))))))((.((.....--------------.)).))...- ( -22.80) >DroSim_CAF1 21461 104 + 1 GAUC-AAGAAAAAUGACUUUUGUGGGUUUUCGUAAUUUUCAUUGCACGCGUAAUUGAAAAUUUUCAAAUUCCUGCUUGCAUUUUUCGCCGCUCGCU--------------CGCCGUUUC- ....-..((((((((.(....(..((..((.(.((((((((((((....)))).))))))))..).))..))..)..)))))))))((.((.....--------------.)).))...- ( -22.80) >DroEre_CAF1 24641 118 + 1 GAUC-AAGAAAAAUGACUUUUGUGGGUUUUCGUAAUUUUCAUUGCACGCGUAAUUGAAAAUUUUCAAAUUCCUGCUUGCAUUUUUCGCCGCCCGCCGCCCGCCACCCGCCACCCGCUUC- ....-..((((((((.(....(..((..((.(.((((((((((((....)))).))))))))..).))..))..)..))))))))).......((.(...((.....))...).))...- ( -22.60) >DroYak_CAF1 5902 104 + 1 GAUC-AAGAAAAAUGACUUUUGUGGGUUUUCGUAAUUUUCAUUGCACGCGUAAUUGAAAAUUUUCAAAUUCCUGCUUGCAUUUUUCGCCGCCCGUU--------------UCCCGUUUC- ....-..((((((((.(....(..((..((.(.((((((((((((....)))).))))))))..).))..))..)..)))))))))..........--------------.........- ( -21.40) >consensus GAUC_AAGAAAAAUGACUUUUGUGGGUUUUCGUAAUUUUCAUUGCACGCGUAAUUGAAAAUUUUCAAAUUCCUGCUUGCAUUUUUCGCCGCUCGCU______________CCCCGUUUC_ .......((((((((.(....(..((..((.(.((((((((((((....)))).))))))))..).))..))..)..))))))))).................................. (-21.32 = -21.32 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:25 2006