Locus 8574

Sequence ID 3L_DroMel_CAF1
Location 22,356,630 – 22,356,744
Length 114
Max. P 0.965752
window14051

overview

Window 1

Location 22,356,630 – 22,356,744
Length 114
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 91.90
Mean single sequence MFE -35.02
Consensus MFE -30.28
Energy contribution -30.12
Covariance contribution -0.16
Combinations/Pair 1.19
Mean z-score -2.32
Structure conservation index 0.86
SVM decision value 1.59
SVM RNA-class probability 0.965752
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22356630 114 - 23771897
GCGGAGGUUGAAAAGUGGCCUCCUGCACAGGGCUGCGAAAAGUAGAAAAAGCAAUUUCGAAAUCCCAAAGAAAUUGCAAAAUUCCAUGCGGCAACGACAACGG------CGGCGGUACAG
(((((((((.......))))))).)).....(((((..............((((((((...........)))))))).........((((....)).))...)------))))....... ( -34.90)
>DroPse_CAF1 55773 119 - 1
AGGGGGGAUGAAAAGUUGCCUCCUCCAC-GGGCUGCGAAAAGUAGAAAAAGCAAUUUCGAAAUCCCAAAGAAAUUGCAAAAUUCCAUGCGGCAGCGUCGACGACGGCAACGGCGGUUCAG
..((((((.(........).))))))..-(((((((..............((((((((...........)))))))).....((.((((....)))).))...((....))))))))).. ( -36.00)
>DroSec_CAF1 7704 114 - 1
GCGGAGGUUGAAAAGUUGCCUCCUGCACAGGACUGCGAAAAGUAGAAAAAGCAAUUUCGAAAUCCCAAAGAAAUUGCAAAAUUCCAUGCGGCAACGACAACGG------CGGUGGUUCAG
((((((((.........)))))).))...((((..(..............((((((((...........))))))))......((.((((....)).))..))------..)..)))).. ( -33.50)
>DroSim_CAF1 21138 114 - 1
GCGGAGGUUGAAAAGUUGCCUCCUGCACAGGGCUGCGAAAAGUAGAAAAAGCAAUUUCGAAAUCCCAAAGAAAUUGCAAAAUUCCAUGCGGCAACGACAACGG------CGGCGGUUCAG
((((((((.........)))))).))...(((((((..............((((((((...........))))))))......((.((((....)).))..))------..))))))).. ( -35.50)
>DroEre_CAF1 24329 114 - 1
GCGGAGGUGGAAAAGUUGCCUCCUGCACAGGGCUGCGAAAAGUAGAAAAAGCAAUUUCGAAAUCCCAAAGAAAUUGCAAAAUUCCAUGCGACAACGGCAACGG------CGGCGGUUCAG
(((((((..(.....)..))))).))...(((((((..............((((((((...........))))))))...........((....((....)).------))))))))).. ( -37.50)
>DroYak_CAF1 5589 113 - 1
GCGGAGGUUUAAGAGUUGCCUCCUGCAAAGGGCUGCGAAAAGUAGAAAAAGCAAUUUCGAAAUCCCAAAGAAAUUGCAAAAUUCCAUGGGACAACGACAACG-------CGGCGGUUCAG
((((((((.........)))))).)).....((((((.............((((((((...........))))))))....(((....))).........))-------))))....... ( -32.70)
>consensus
GCGGAGGUUGAAAAGUUGCCUCCUGCACAGGGCUGCGAAAAGUAGAAAAAGCAAUUUCGAAAUCCCAAAGAAAUUGCAAAAUUCCAUGCGGCAACGACAACGG______CGGCGGUUCAG
((((((((.........)))))).))...(((((((..............((((((((...........)))))))).........((((....)).))............))))))).. (-30.28 = -30.12 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:24 2006