Locus 8573

Sequence ID 3L_DroMel_CAF1
Location 22,355,688 – 22,355,788
Length 100
Max. P 0.575763
window14050

overview

Window 0

Location 22,355,688 – 22,355,788
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 97.80
Mean single sequence MFE -34.40
Consensus MFE -32.72
Energy contribution -32.52
Covariance contribution -0.20
Combinations/Pair 1.07
Mean z-score -1.17
Structure conservation index 0.95
SVM decision value 0.08
SVM RNA-class probability 0.575763
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22355688 100 - 23771897
CAUCCUCGGCCGCACUUCACUAGCUGCUGGCUGGGAACUUUAACUUCAUCCCGGAGCUUGCUCUUGUGUGUUCGAGGCUUAUGUCACCUGCCGGGCAGGA
...(((((..(((((......(((.(((..((((((............)))))))))..)))...)))))..))))).........(((((...))))). ( -35.90)
>DroSec_CAF1 6671 100 - 1
CAUCCUCGGCCGCACUUCACUAGCUGCUGGCUGGGAACUUUAACUUCAUCCUGGAGCUCGCUCUUGUGUGUUCGAGGCUUAUGUCACCUGCCGGGCAGGA
..(((.((((((((((.....)).))).)))))))).............(((.((((.(((....))).)))).))).........(((((...))))). ( -35.60)
>DroSim_CAF1 20106 100 - 1
CAUCCUCGGCCGCACUUCACUAGCUGCUGGCUGGGAACUUUAACUUCAUCCCGGAGCUCGCUCUUGUGUGUUCGAGGCUUAUGUCACCUGCCGGGCAGGA
...(((((..(((((......(((.(((..((((((............)))))))))..)))...)))))..))))).........(((((...))))). ( -35.40)
>DroEre_CAF1 23284 99 - 1
CAUCCUCGGCUGCACU-CACUAGCUGCUGGCUGGGAACUUUAACUUCAUCCCGGAGCUCGCUCUUGUGUGUUCGAGGCUUAUGUCACCUGCCGGGCAGGA
...((((((..((((.-((..(((.(((..((((((............)))))))))..)))..)).)))))))))).........(((((...))))). ( -34.30)
>DroYak_CAF1 4671 100 - 1
CAUCCUCGGCUGCACUUCACUAGCUGCUGGCUGGGAACUUUAACUUCAUCCCGGAGCUCGCUCUUGUGUGUUCGAGGCUUAUGUCACCUGCCGGGCAGAA
..(((.((((((((((.....)).))).)))))))).........((..((((((((.(((....))).))))..(((....)))......))))..)). ( -30.80)
>consensus
CAUCCUCGGCCGCACUUCACUAGCUGCUGGCUGGGAACUUUAACUUCAUCCCGGAGCUCGCUCUUGUGUGUUCGAGGCUUAUGUCACCUGCCGGGCAGGA
...(((((..(((((......(((.(((..((((((............)))))))))..)))...)))))..))))).........(((((...))))). (-32.72 = -32.52 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:23 2006