Locus 8571

Sequence ID 3L_DroMel_CAF1
Location 22,353,684 – 22,353,802
Length 118
Max. P 0.858491
window14047

overview

Window 7

Location 22,353,684 – 22,353,802
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 92.29
Mean single sequence MFE -39.80
Consensus MFE -33.74
Energy contribution -34.62
Covariance contribution 0.88
Combinations/Pair 1.09
Mean z-score -1.54
Structure conservation index 0.85
SVM decision value 0.82
SVM RNA-class probability 0.858491
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22353684 118 - 23771897
AGGAAAUUAGCAACAUUAGAAGGUACCCAACUAUUUGGGUGCGGAGAGGGGCUUGAAAACCGCAAGCCUUGAGAGACCGACCAGCGGGGCACGCAAGGGUCAAGUCGAGUGUGAAGCA
.........((.(((((.((..((((((((....))))))))((...((((((((.......))))))))......))((((.(((.....)))...))))...)).)))))...)). ( -40.20)
>DroSec_CAF1 4576 118 - 1
GGGAAAUUAGCAACAUUAGAAGGUACCCAACUACUUGGGUGCGGAGAGGGGCUCGCAAACCGCAAGCCUUGAGAGACCGACCAGCGGGGCACGCAAGGGUCAAGUCGAGUGUGAAGCA
.........((.(((((.((..((((((((....))))))))((...((((((.((.....)).))))))......))((((.(((.....)))...))))...)).)))))...)). ( -40.00)
>DroSim_CAF1 18005 118 - 1
AGGAAAUUAGCAACAUUAGAAGGUACCCAACUAUUUGGGUGCGGAGAGGGGCUCGCAAACCGCAAGCCUUGAGAGACCGACCAGCGGGGCACGCAAGGGUCAAGUCGAGUGUGAAGCA
.........((.(((((.((..((((((((....))))))))((...((((((.((.....)).))))))......))((((.(((.....)))...))))...)).)))))...)). ( -40.00)
>DroEre_CAF1 21332 118 - 1
AGGAAAUUAGCAACAUUAGAAGGUACCCAGCUUUUUGGGUGCGGAGAGCGGCUCGCGAACCGCAAGCCUUGGGAGUCCGGCCAGCAGGCCACGCAAGGGUCAAGUCGAGUGCGAGGCA
.....................((..((((((((((((....))))))))((((.(((...))).)))).))))...)).(((....((((.(....)))))...(((....)))))). ( -40.80)
>DroYak_CAF1 2599 118 - 1
AGGAAAUUAGCAACAAUAGAAGGUACCCAACUAUUUGGGUGCGGAGAGGGGCUCGUGGACCGCAAGCCUUGAGAGACCGGCCAACAGGCCACGCUAGGGUCAAGUCAAGUGUGAAGCA
..((..(((((...........((((((((....))))))))((...((((((.(((...))).))))))......))((((....))))..)))))..))................. ( -38.00)
>consensus
AGGAAAUUAGCAACAUUAGAAGGUACCCAACUAUUUGGGUGCGGAGAGGGGCUCGCAAACCGCAAGCCUUGAGAGACCGACCAGCGGGGCACGCAAGGGUCAAGUCGAGUGUGAAGCA
.........((.(((((.((..((((((((....))))))))((...((((((.((.....)).))))))......))((((.(((.....)))...))))...)).)))))...)). (-33.74 = -34.62 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:20 2006