Locus 8570

Sequence ID 3L_DroMel_CAF1
Location 22,352,927 – 22,353,020
Length 93
Max. P 0.992718
window14046

overview

Window 6

Location 22,352,927 – 22,353,020
Length 93
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 88.67
Mean single sequence MFE -29.82
Consensus MFE -27.18
Energy contribution -27.22
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -2.03
Structure conservation index 0.91
SVM decision value 2.35
SVM RNA-class probability 0.992718
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22352927 93 + 23771897
CACCGUGGGGCAGGAAACCCGAGCCUCAGUUUGGCAACUAAAUGCAUCAGGCCCCGAAUGCCACGAAGGCGACAAAUAUGGCCAAAAUGCCAG------
.....((((((..((....(((((....)))))(((......))).))..))))))..((((.....)))).......((((......)))).------ ( -28.60)
>DroSec_CAF1 3865 93 + 1
CACCGAGGGGCAGGAAACCCGAGCCUCAGUUUGGCAACUAACUGCAUCCAGCCCCGAAUGCCACGCAGGCGACAAAUAUGGCCAAAAUGCCAA------
......(((((.(((....(((((....)))))(((......))).))).)))))...((((.....)))).......((((......)))).------ ( -30.30)
>DroSim_CAF1 17285 93 + 1
CACCGAGGGGCAGGAAACCCGAGCCUCAGUUUGGCAACUAACUGCAUCCAGCCCCGAAUGCCACGCAGGCGACAAAUAUGGCCAAAAUGCCAG------
......(((((.(((....(((((....)))))(((......))).))).)))))...((((.....)))).......((((......)))).------ ( -30.30)
>DroEre_CAF1 20623 95 + 1
CACCGAGGGGCAGGAAACCCGAGCCUAAGUUUGGCAACCAAC----UGCAGCCCCGAAUGCCACGCGGGCGACAAAUAUGGCCAAAAUGCCAGCUUCUA
....((((((((((....))(.(((...((((((((......----))).((((((.......)).))))..)))))..))))....))))..)))).. ( -29.40)
>DroYak_CAF1 1876 92 + 1
CACCAAGGGGCAGGAAACCCGAUUCUAAGUUUGGCAACCAACU-CAUGCAGCCCCGAAUGCCACGCAGGCGACAAAUAUGGCAGAAAUGCCAG------
......(((((.((....)).......((((.(....).))))-......)))))...((((.....)))).......(((((....))))).------ ( -30.50)
>consensus
CACCGAGGGGCAGGAAACCCGAGCCUCAGUUUGGCAACUAACUGCAUCCAGCCCCGAAUGCCACGCAGGCGACAAAUAUGGCCAAAAUGCCAG______
......(((((.(....)((((((....))))))................)))))...((((.....)))).......((((......))))....... (-27.18 = -27.22 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:18 2006