| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,581,019 – 2,581,133 |
| Length | 114 |
| Max. P | 0.986096 |
| Location | 2,581,019 – 2,581,133 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 76.61 |
| Mean single sequence MFE | -34.70 |
| Consensus MFE | -19.19 |
| Energy contribution | -19.75 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.55 |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.986096 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2581019 114 - 23771897 CAGCUGCAGCAGCUGCAAAUUAAAUUUCAUGUUCUUCAAAACGUGAUUCGCCUGCAAUCGAGCCACCUCCAGCUGACAGUUCACAUCCAAAAGUCCCGGGAUGAACUGCAGCUG (((((((((((((((...........(((((((......))))))).............(((....)))))))))........(((((..........)))))..))))))))) ( -36.50) >DroPse_CAF1 8477 114 - 1 CAACAGCAUCAGCUGCAACUGAAGUACCAUAUCAUGGCAACUAUUUUUCACCUGCGAGCGAAUCUUCUCUGGCUGACACUGCAGACGGAGGAAUCGCACAAGGAAAUGCAGCUG .........((((((((.....(((.((((...))))..)))........(((..(.((((...(((((((.(((......))).))))))).)))).).)))...)))))))) ( -35.40) >DroSim_CAF1 7992 114 - 1 CAGCUGCAGCAGCUGCAAAUCAAAUUUCAUGUCCUUCAAAACGUGAUUCGCCUGCAAUCGAGCCACCUCCAGCUGACUGUUCACAUCCAAAAGUCGCGGGAUGAACUGCAGCUG (((((((((.................((((((........))))))(((((((((.....(((........)))((((.............))))))))).))))))))))))) ( -35.92) >DroEre_CAF1 5318 114 - 1 CAGCUGCAGCAGCUUCAAAUCAAAUUCCACGUCCUUCAAUACGUGCUUCGCCUGCAAUCGAGCCACCUCCAGCUGACUGUUCACAUCCAAAAGUCCCAGGAUGAACUGCAGCUA .(((((((((((((.............(((((........)))))..............(((....))).)))))........(((((..........)))))..)))))))). ( -30.60) >DroYak_CAF1 8017 114 - 1 CAGUUGCAGCAGCUGCAAAUCAAAUUCCAUGUCCUGCAAUUCGUGAUUCGCCUGCAAACGAGCCAUCUCCAGCUGACCGUUCACAUCCAAAAGUCCCAGGAUGAGCUGCAGCUG ((((((((((.((.((.(((((((((.((.....)).))))..))))).))..))....((((..((.......))..)))).(((((..........))))).)))))))))) ( -34.40) >DroPer_CAF1 7195 114 - 1 CAACAGCAUCAGCUGCAACUGAAGUACCAUAUCAUGGCAACUAUUUUUCACCUGCGAGCGAAUCUUCUCUGGCUGACACUGCAGACGGAGGAAUCGCACAAGGAAAUGCAGCUG .........((((((((.....(((.((((...))))..)))........(((..(.((((...(((((((.(((......))).))))))).)))).).)))...)))))))) ( -35.40) >consensus CAGCUGCAGCAGCUGCAAAUCAAAUUCCAUGUCCUGCAAAACGUGAUUCGCCUGCAAUCGAGCCACCUCCAGCUGACAGUUCACAUCCAAAAGUCCCAGGAUGAACUGCAGCUG (((((((((((((((............((((..........)))).((((........)))).......))))))........(((((..........)))))..))))))))) (-19.19 = -19.75 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:52 2006