Locus 8569

Sequence ID 3L_DroMel_CAF1
Location 22,352,008 – 22,352,123
Length 115
Max. P 0.845395
window14045

overview

Window 5

Location 22,352,008 – 22,352,123
Length 115
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.13
Mean single sequence MFE -36.30
Consensus MFE -25.85
Energy contribution -25.88
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -2.02
Structure conservation index 0.71
SVM decision value 0.77
SVM RNA-class probability 0.845395
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22352008 115 - 23771897
CCCAAAAA--GCUGACCCAAG-AUGCUGUUGGCCUGGUCUUUGGUCGUUUGGUCGUUUGGUCUUUUGGUCUUUUGGGUCCCAGGCAA-ACAAAUGAUAUUUCCC-GAUAUCGGUCGGCGA
........--(((((((....-....((((.((((((.(((.(..((...(..(....)..)...))..)....)))..)))))).)-)))...((((((....-))))))))))))).. ( -37.40)
>DroSec_CAF1 2963 108 - 1
CCCAAAAA--GCUGACCCAAG-AUGCUGUUGGCCUGGUCUC-------UUGGUCGUUUGGUCGCUUGGUCUUUUGGGUCCCAGGCAA-ACAAAUGAUAUUUCCC-GAUAUCGGUCGGCGA
........--(((((((((((-(.(((........))).))-------)))((((((((...((((((.((....))..))))))..-.)))))))).......-......))))))).. ( -37.40)
>DroSim_CAF1 16391 108 - 1
CCCAAAAA--GCUGACCCAAG-AUGCUGUUGGCCUGGUCUC-------UUGGUCGUUUGGUCGCUUGGUCUUUUGGGUCCCAGGCAA-ACAAAUGAUAUUUCCC-GAUAUCGGUCGGCGA
........--(((((((((((-(.(((........))).))-------)))((((((((...((((((.((....))..))))))..-.)))))))).......-......))))))).. ( -37.40)
>DroEre_CAF1 19840 99 - 1
CCCAAAAA--GCUGACCCAAG-AUGCUGUUGGCCUGGUCU----------------UUGGUCUUUUGGACUUUUGGGUCCCAGGCAA-ACAAAUGAUAUUUAUC-GAUAUCGGUCGGCGA
........--(((((((....-....((((.((((((.((----------------(.((((.....))))...)))..)))))).)-)))...((((((....-))))))))))))).. ( -36.40)
>DroYak_CAF1 1091 92 - 1
CCCAAAAA--GCUGACCCGAG-AUGCUGUUGGCCUGGU-----------------------CUUUUGGUCUUUUGGGUCCCAGGCAA-ACAAAUGAUAUUUAUC-GAUAUCGGUCGGCGA
........--(((((((....-....((((.((((((.-----------------------..((..(....)..))..)))))).)-)))...((((((....-))))))))))))).. ( -31.90)
>DroPer_CAF1 54689 111 - 1
CCCAAAAAAUGCUGACCCAAGCAAACUGUUGGCCUGGUCCG-------GAGCCCGU--AGCCCGGGGUACUGCUGGAUCCCAGGCAAAACAAAUGAUAUUUAUCGGAUAUCGGCUGGCAU
........(((((..((.........((((.((((((((((-------(.((((..--......))))....)))))..))))))..))))...((((((.....))))))))..))))) ( -37.30)
>consensus
CCCAAAAA__GCUGACCCAAG_AUGCUGUUGGCCUGGUCU________UUGGUCGUUUGGUCUUUUGGUCUUUUGGGUCCCAGGCAA_ACAAAUGAUAUUUACC_GAUAUCGGUCGGCGA
..........(((((((.........(((..((((((..........................................))))))...)))...((((((.....))))))))))))).. (-25.85 = -25.88 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:18 2006