Locus 8568

Sequence ID 3L_DroMel_CAF1
Location 22,350,553 – 22,350,646
Length 93
Max. P 0.884153
window14044

overview

Window 4

Location 22,350,553 – 22,350,646
Length 93
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.04
Mean single sequence MFE -27.78
Consensus MFE -20.04
Energy contribution -21.04
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.11
Structure conservation index 0.72
SVM decision value 0.93
SVM RNA-class probability 0.884153
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22350553 93 - 23771897
CACACUAAUACACAGGGCUUUAUUUGCAUUUUGGCUACUGCUGUUUAUUUUCGAGUUGAUUUUGAAGUGAACAGUUUGCUUAAUGCCCGAUGU---------------------------
.........(((..((((.(((...(((...........(((((((((((.((((.....))))))))))))))).))).))).))))..)))--------------------------- ( -24.50)
>DroPse_CAF1 50275 120 - 1
CGCAGCCACACACAGAGUUGUAUUUGCAUUUUGGCGGCUGGUGUUUAUUUUCGAGUUGAUUUUGAAGUGAACAGUUUGCUUAAUUCACGAUGCACGCUGGCACGUUGCAGGAUGCCCUUC
.((((((.......).)))))....(((((((((((((..((((.((((((((((.....))))))(((((.((....))...))))))))).))))..)).)))..))))))))..... ( -33.70)
>DroSec_CAF1 1512 93 - 1
CACUCUAAUACACAGGGCAGUAUUUGCAUUUUGGCUGCUGCUGUUUAUUUUCGAGUUGAUUUUGAAGUGAACAGUUUGCUUAAUGCCCGAUGU---------------------------
.........(((..(((((......((......)).((.(((((((((((.((((.....)))))))))))))))..))....)))))..)))--------------------------- ( -26.90)
>DroSim_CAF1 14929 93 - 1
CACUCUAAUACACAGGGCAGUAUUUGCAUUUUGGCUGCUGCUGUUUAUUUUCGAGUUGAUUUUGAAGUGAACAGUUUGCUUAAUGCCCGAUGU---------------------------
.........(((..(((((......((......)).((.(((((((((((.((((.....)))))))))))))))..))....)))))..)))--------------------------- ( -26.90)
>DroEre_CAF1 18357 93 - 1
CACACUAAUACACAGGGCAGUAUUUGCAUUUUGGCUGCUGCUGUUUAUUUUCGAGUUGAUUUUGAAGUGAACAGUUUGCUUAAUGCCCGAUGU---------------------------
.........(((..(((((......((......)).((.(((((((((((.((((.....)))))))))))))))..))....)))))..)))--------------------------- ( -26.90)
>consensus
CACACUAAUACACAGGGCAGUAUUUGCAUUUUGGCUGCUGCUGUUUAUUUUCGAGUUGAUUUUGAAGUGAACAGUUUGCUUAAUGCCCGAUGU___________________________
.........(((..((((.......((......)).((.(((((((((((.((((.....)))))))))))))))..)).....))))..)))........................... (-20.04 = -21.04 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:16 2006