Locus 8566

Sequence ID	3L_DroMel_CAF1
Location	22,349,878 – 22,349,986
Length	108
Max. P	0.899036

overview

Window 0

Location	22,349,878 – 22,349,986
Length	108
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	88.70
Mean single sequence MFE	-36.62
Consensus MFE	-30.83
Energy contribution	-31.95
Covariance contribution	1.12
Combinations/Pair	1.10
Mean z-score	-1.95
Structure conservation index	0.84
SVM decision value	1.01
SVM RNA-class probability	0.899036
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 22349878 108 - 23771897
GUGUGCGUGCGA-GGGUAUUUGUCUGUGGGGGA--GGCGA---CACAGCAUUGGCAACAAACAAUGCAAACAUUCUCCAGAGAAUUGCCAAAGCUUUUCCGCUCCAAAUAGCAG
(.(.(((.((..-.((((....(((.(((((((--(....---)...((((((........)))))).....))))))).)))..))))...)).....))).))......... ( -33.00)
>DroSec_CAF1 822 109 - 1
----GUGUGCGA-GGGUAUUUGUCUGUGGGGGGGUGGCGACAACACAGCAUUGGCAACAAACAAUGCAAACAUUCUCCAGAGAAUUGCCAAAGCUUUUCCGCUCCAAAUAGCCG
----........-((.((((((...((((..(((((((((.......((((((........)))))).....((((....)))))))))...))))..))))..)))))).)). ( -37.80)
>DroSim_CAF1 14247 109 - 1
----GUGUGCGA-GGGUAUUUGUCUGUGGGGGGGUGGCGACAACCCAGCAUUGGCAACAAACAAUGCAAACAUUCUCCAGAGAAUUGCCAAAGCUUUUCCGCUCCAAAUAGCCG
----........-((.((((((...((((..(((((((((.......((((((........)))))).....((((....)))))))))...))))..))))..)))))).)). ( -37.80)
>DroEre_CAF1 17731 105 - 1
----GUGCGCGCGGGGUAUUUGGCUGCGGGGAA--GGCGA---CACAACAUUGGCAACAAACAAUGGAAACAUUCUCCAGAGCAUUGCCAAAGCUUUUCCGCUCCAAAUAGCCC
----........(((.(((((((..((((..((--(.((.---.....).(((((((.......((((.......)))).....))))))).))))..)))).))))))).))) ( -37.90)
>consensus
____GUGUGCGA_GGGUAUUUGUCUGUGGGGGA__GGCGA___CACAGCAUUGGCAACAAACAAUGCAAACAUUCUCCAGAGAAUUGCCAAAGCUUUUCCGCUCCAAAUAGCCG
.............((.((((((...((((..(((((((((.......((((((........)))))).....((((....)))))))))...))))..))))..)))))).)). (-30.83 = -31.95 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:19:13 2006